MirGeneDB 3.0
MirGeneDB ID

Laf-Mir-489

Family name MIR-489 (all species)
Seed UGACAUC
Species African bush elephant (Loxodonta africana)
MiRBase ID
Paralogues
Orthologues Aca-Mir-489-v1  Aca-Mir-489-v2  Ami-Mir-489-v1  Ami-Mir-489-v2  Bta-Mir-489-v1  Bta-Mir-489-v2  Bta-Mir-489-v3  Cfa-Mir-489  Cja-Mir-489  Cli-Mir-489-v1  Cli-Mir-489-v2  Cpi-Mir-489-v1  Cpi-Mir-489-v2  Dno-Mir-489  Dre-Mir-489-v1  Dre-Mir-489-v2  Eca-Mir-489  Gga-Mir-489-v1  Gga-Mir-489-v2  Gja-Mir-489  Gmo-Mir-489-v1  Gmo-Mir-489-v2  Hsa-Mir-489-v1  Hsa-Mir-489-v2  Lch-Mir-489  Loc-Mir-489-v1  Loc-Mir-489-v2  Mal-Mir-489-v1  Mal-Mir-489-v2  Mml-Mir-489-v1  Mml-Mir-489-v2  Mmr-Mir-489  Mmu-Mir-489  Mun-Mir-489  Ocu-Mir-489  Pab-Mir-489  Pbv-Mir-489  Rno-Mir-489  Sha-Mir-489  Spt-Mir-489  Tgu-Mir-489-v1  Tgu-Mir-489-v2  Tni-Mir-489-v1  Tni-Mir-489-v2  Xla-Mir-489-P1-v1  Xla-Mir-489-P1-v2  Xla-Mir-489-P2-v1  Xla-Mir-489-P2-v2  Xtr-Mir-489-v1  Xtr-Mir-489-v2 
Node of Origin (locus) Osteichthyes
Node of Origin (family) Osteichthyes
Genome context
(GCA_000001905.1_Loxafr3.0)		 GL010032.1: 56015218-56015277 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGACUACACAGCUGUGGGUGCCAGCUUGGCGGUUGUAUGUGUGGCGCCAUUUACUUGAACUCUUAGGAGUGACAUCACAUAUACGGUGGCUAAACUGCUCCAUGGACAACAAUUAAAAGG
Get precursor sequence
Structure
        10           20        30        40        50         
UGACUACACAGCUGUGGGU---| C  C     G UU          CGC     ACUUGA 
                      GC AG UUGGC G  GUAUGUGUGG   CAUUU      A
                      CG UC AAUCG U  CAUAUACACU   GUGAG      C
GGAAAAUUAACAACAGGUACCU^ -  A     G GG          ACA     GAUUCU 
.       110       100         90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Wh
Star sequence

Laf-Mir-489_5p* (predicted)
mirBase accessionNone
Sequence 
0- GGUUGUAUGUGUGGCGCCAUUU -22
Get sequence
Mature sequence

Laf-Mir-489_3p (predicted)
mirBase accessionNone
Sequence 
38- GUGACAUCACAUAUACGGUGGC -60
Get sequence