MirGeneDB 3.0
MirGeneDB ID

Tni-Mir-489-v2

Family name MIR-489 (all species)
Seed GACAUCA
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-489
Paralogues Tni-Mir-489-v1 
Orthologues Aca-Mir-489-v2  Ami-Mir-489-v2  Bta-Mir-489-v2  Cfa-Mir-489  Cja-Mir-489  Cli-Mir-489-v2  Cpi-Mir-489-v2  Dno-Mir-489  Dre-Mir-489-v2  Eca-Mir-489  Gga-Mir-489-v2  Gja-Mir-489  Gmo-Mir-489-v2  Hsa-Mir-489-v2  Laf-Mir-489  Lch-Mir-489  Loc-Mir-489-v2  Mal-Mir-489-v2  Mml-Mir-489-v2  Mmr-Mir-489  Mmu-Mir-489  Mun-Mir-489  Ocu-Mir-489  Pab-Mir-489  Pbv-Mir-489  Rno-Mir-489  Sha-Mir-489  Spt-Mir-489  Tgu-Mir-489-v2  Xtr-Mir-489-v2 
Node of Origin (locus) Osteichthyes
Node of Origin (family) Osteichthyes
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 21_random: 1370453-1370513 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-489-v2)		 Mir-489-v2 21_random: 1370453-1370513 [+] UCSC Ensembl
Mir-489-v1 21_random: 1370454-1370512 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCCCAUCCUCCCAUACUGGUGGUGGCCUGGUGGUCGUAUGCAUGACGUCAUUUACUUCGAUGAUUGGAGUGACAUCAUAUGUACGGCUGCUAAACCGCUACAAGAGACUUCUGCAGUGCUU
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Structure
        10          20        30        40        50          
UCCCAUCCUCCCAUACUG--|      CC   UG       GC    C      UACUUCG 
                    GUGGUGG  UGG  GUCGUAU  AUGA GUCAUU       \
                    CAUCGCC  AUC  CGGCAUG  UACU CAGUGA       A
UUCGUGACGUCUUCAGAGAA^      AA   GU       UA    A      GGUUAGU 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Sp Sp Sp To
Star sequence

Tni-Mir-489-v2_5p* (predicted)
mirBase accessionNone
Sequence 
0- UGGUCGUAUGCAUGACGUCAUU -22
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Mature sequence

Tni-Mir-489-v2_3p
mirBase accessionMIMAT0002939
Sequence 
39- UGACAUCAUAUGUACGGCUGCU -61
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