Mir
Gene
DB
2.1
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41 microRNA genes with seed CACAGCC
Sort by genome coordinates
Motifs
MirGeneDB ID
MiRBase ID
Family
Seed
5p accession
3p accession
▲
Chromosome
Start
End
Strand
Node of origin (locus)
Node of origin (family)
3' NTU
UG
UGUG
CNNC
Mml-Novel-4
None
MML-NOVEL-4
CACAGCC
None
None
chr15
43444887
43444947
-
M. mulatta
M. mulatta
No
1
Bge-Mir-2-P4c-v2
None
MIR-2
CACAGCC
None
None
KZ615436.1
353745
353804
-
B. germanica
Protostomia
No
1
1
1
Npo-Mir-2-o23
None
MIR-2
CACAGCC
None
None
JACATO010000013.1
410351
410408
+
Cephalopoda
Protostomia
Unknown
1
1
Obi-Mir-2-o20-v1
None
MIR-2
CACAGCC
None
None
KQ419829
51363
51423
-
Cephalopoda
Protostomia
No
1
Ovu-Mir-2-o22a
None
MIR-2
CACAGCC
None
None
RXHP01057295.1
22936
22995
-
Octopus
Protostomia
No
1
Bge-Mir-2-P4d-v2
None
MIR-2
CACAGCC
None
None
KZ615436.1
350982
351043
-
B. germanica
Protostomia
No
1
1
Esc-Mir-2-o20-v1
None
MIR-2
CACAGCC
None
None
Esc-Mir-2-o20-v1_pre_SRIE01000454.1:381798-382057
101
160
+
Cephalopoda
Protostomia
No
1
Ovu-Mir-2-o23-v1
None
MIR-2
CACAGCC
None
None
RXHP01057295.1
21562
21620
-
Cephalopoda
Protostomia
No
1
1
Obi-Mir-2-o22a
None
MIR-2
CACAGCC
None
None
KQ419829
51011
51070
-
Octopus
Protostomia
No
1
Bge-Mir-2-P1-v2
None
MIR-2
CACAGCC
None
None
KZ615136.1
496135
496196
+
Arthropoda
Protostomia
No
1
Npo-Mir-2-o20
None
MIR-2
CACAGCC
None
None
JACATO010000013.1
409573
409633
+
Cephalopoda
Protostomia
Unknown
1
Esc-Mir-2-o21
None
MIR-2
CACAGCC
None
None
Esc-Mir-2-o21_pre_SRIE01000454.1:381988-382249
101
162
+
Cephalopoda
Protostomia
No
1
Obi-Mir-2-o23
None
MIR-2
CACAGCC
None
None
KQ419829
49652
49710
-
Cephalopoda
Protostomia
No
1
1
Esc-Mir-2-o23-v1
None
MIR-2
CACAGCC
None
None
Esc-Mir-2-o23-v1_pre_SRIE01000454.1:384530-384793
101
164
+
Cephalopoda
Protostomia
No
1
1
Cgi-Mir-2-o28
None
MIR-2
CACAGCC
None
None
scaffold602
445001
445057
+
C. gigas
Protostomia
No
1
Npo-Mir-2-o22f
None
MIR-2
CACAGCC
None
None
JACATO010000013.1
409822
409878
+
N. pompilius
Protostomia
Unknown
1
Ovu-Mir-2-o20-v1
None
MIR-2
CACAGCC
None
None
RXHP01057295.1
23280
23340
-
Cephalopoda
Protostomia
No
1
Dme-Mir-2-P4a-v2
dme-mir-2a-1
MIR-2
CACAGCC
MIMAT0020780
MIMAT0000106
2L
19569901
19569966
-
Drosophila
Protostomia
No
1
Dme-Mir-2-P4b-v2
dme-mir-2a-2
MIR-2
CACAGCC
MIMAT0020781
MIMAT0000106
2L
19569495
19569554
-
Drosophila
Protostomia
No
Dme-Mir-2-P1-v1
dme-mir-2c
MIR-2
CACAGCC
MIMAT0020845
MIMAT0000411
3R
15417760
15417826
-
Arthropoda
Protostomia
No
Sme-Mir-2-o58
sme-mir-2b
MIR-2
CAUCAUU
MIMAT0003965
MIMAT0003966
NNSW01000014_dd_Smes_g4_14
3096425
3096480
+
S. mediterranea
Protostomia
No
1
Tca-Mir-2-P4-v2
tca-mir-2-2
MIR-2
CACAGCC
MIMAT0019096
MIMAT0008353
LG3
561348
561412
+
Arthropoda
Protostomia
No
1
Tca-Mir-2-P1-v1
tca-mir-2-3
MIR-2
CACAGCC
MIMAT0019093
MIMAT0008353
LG3
560832
560890
+
Arthropoda
Protostomia
No
1
Tca-Mir-2-P3-v2
tca-mir-2-1
MIR-2
CACAGCC
MIMAT0019094
MIMAT0008353
LG3
561198
561260
+
Arthropoda
Protostomia
No
1
Dan-Mir-2-P4b-v2
dan-mir-2a-2
MIR-2
CACAGCC
None
MIMAT0008414
scaffold_12916
12013993
12014052
+
Drosophila
Protostomia
No
Dan-Mir-2-P4a-v2
dan-mir-2a-1
MIR-2
CACAGCC
None
MIMAT0008414
scaffold_12916
12013671
12013735
+
Drosophila
Protostomia
No
1
Dan-Mir-2-P1-v1
dan-mir-2c
MIR-2
CACAGCC
None
MIMAT0008442
scaffold_13340
12827849
12827913
-
Arthropoda
Protostomia
No
Dmo-Mir-2-P1
dmo-mir-2c
MIR-2
CACAGCC
None
MIMAT0008652
scaffold_6540
10568108
10568173
+
Arthropoda
Protostomia
No
Dmo-Mir-2-P4a-v2
dmo-mir-2a-1
MIR-2
CACAGCC
None
MIMAT0008672
scaffold_6500
6908329
6908396
+
Drosophila
Protostomia
No
1
Dmo-Mir-2-P4b-v2
dmo-mir-2a-2
MIR-2
CACAGCC
None
MIMAT0008672
scaffold_6500
6908917
6908978
+
Drosophila
Protostomia
No
1
1
Dsi-Mir-2-P4a-v2
dsi-mir-2a-1
MIR-2
CACAGCC
None
MIMAT0008853
2L
19065589
19065654
-
Drosophila
Protostomia
No
1
Dsi-Mir-2-P4b-v2
dsi-mir-2a-2
MIR-2
CACAGCC
None
MIMAT0008853
2L
19065170
19065229
-
Drosophila
Protostomia
No
Dsi-Mir-2-P1-v1
dsi-mir-2c
MIR-2
CACAGCC
None
MIMAT0008854
3R
9985314
9985380
+
Arthropoda
Protostomia
No
Dya-Mir-2-P1-v1
dya-mir-2c
MIR-2
CACAGCC
None
MIMAT0009097
3R
15188380
15188446
+
Arthropoda
Protostomia
No
Dya-Mir-2-P4a-v2
dya-mir-2a-1
MIR-2
CACAGCC
None
MIMAT0009106
2R
6066959
6067024
-
Drosophila
Protostomia
No
1
Dya-Mir-2-P4b-v2
dya-mir-2a-2
MIR-2
CACAGCC
None
MIMAT0009106
2R
6066569
6066628
-
Drosophila
Protostomia
No
Cte-Mir-2-o36
cte-mir-2b
MIR-2
CACAGCC
None
MIMAT0009504
CAPTEscaffold_933
10045
10113
+
C. teleta
Protostomia
No
1
Aae-Mir-2-P4-v2
aae-mir-2b
MIR-2
CACAGCC
None
MIMAT0014306
supercont1.268
887257
887317
-
Arthropoda
Protostomia
No
Aae-Mir-2-P1-v2
aae-mir-2c
MIR-2
CACAGCC
None
MIMAT0014308
supercont1.268
889091
889155
-
Arthropoda
Protostomia
No
Hme-Mir-2-P1-v2
hme-mir-2a
MIR-2
CACAGCC
None
MIMAT0024971
HE671256
344481
344540
+
Arthropoda
Protostomia
No
1
1
Hme-Mir-2-P3-v2
hme-mir-2b
MIR-2
CACAGCC
None
MIMAT0024972
HE671256
344897
344955
+
Arthropoda
Protostomia
No
1
1
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