Mir
Gene
DB
2.1
Home
Browse
Search
Download
Information
41 microRNA genes with seed CACAGCC
Sort by genome coordinates
Motifs
MirGeneDB ID
MiRBase ID
Family
Seed
5p accession
3p accession
Chromosome
Start
End
Strand
Node of origin (locus)
Node of origin (family)
3' NTU
UG
▼
UGUG
CNNC
Mml-Novel-4
None
MML-NOVEL-4
CACAGCC
None
None
chr15
43444887
43444947
-
M. mulatta
M. mulatta
No
1
Npo-Mir-2-o20
None
MIR-2
CACAGCC
None
None
JACATO010000013.1
409573
409633
+
Cephalopoda
Protostomia
Unknown
1
Esc-Mir-2-o21
None
MIR-2
CACAGCC
None
None
Esc-Mir-2-o21_pre_SRIE01000454.1:381988-382249
101
162
+
Cephalopoda
Protostomia
No
1
Hme-Mir-2-P1-v2
hme-mir-2a
MIR-2
CACAGCC
None
MIMAT0024971
HE671256
344481
344540
+
Arthropoda
Protostomia
No
1
1
Bge-Mir-2-P1-v2
None
MIR-2
CACAGCC
None
None
KZ615136.1
496135
496196
+
Arthropoda
Protostomia
No
1
Dmo-Mir-2-P4b-v2
dmo-mir-2a-2
MIR-2
CACAGCC
None
MIMAT0008672
scaffold_6500
6908917
6908978
+
Drosophila
Protostomia
No
1
1
Bge-Mir-2-P4c-v2
None
MIR-2
CACAGCC
None
None
KZ615436.1
353745
353804
-
B. germanica
Protostomia
No
1
1
1
Dmo-Mir-2-P1
dmo-mir-2c
MIR-2
CACAGCC
None
MIMAT0008652
scaffold_6540
10568108
10568173
+
Arthropoda
Protostomia
No
Cte-Mir-2-o36
cte-mir-2b
MIR-2
CACAGCC
None
MIMAT0009504
CAPTEscaffold_933
10045
10113
+
C. teleta
Protostomia
No
1
Npo-Mir-2-o23
None
MIR-2
CACAGCC
None
None
JACATO010000013.1
410351
410408
+
Cephalopoda
Protostomia
Unknown
1
1
Obi-Mir-2-o23
None
MIR-2
CACAGCC
None
None
KQ419829
49652
49710
-
Cephalopoda
Protostomia
No
1
1
Sme-Mir-2-o58
sme-mir-2b
MIR-2
CAUCAUU
MIMAT0003965
MIMAT0003966
NNSW01000014_dd_Smes_g4_14
3096425
3096480
+
S. mediterranea
Protostomia
No
1
Cgi-Mir-2-o28
None
MIR-2
CACAGCC
None
None
scaffold602
445001
445057
+
C. gigas
Protostomia
No
1
Obi-Mir-2-o22a
None
MIR-2
CACAGCC
None
None
KQ419829
51011
51070
-
Octopus
Protostomia
No
1
Ovu-Mir-2-o22a
None
MIR-2
CACAGCC
None
None
RXHP01057295.1
22936
22995
-
Octopus
Protostomia
No
1
Npo-Mir-2-o22f
None
MIR-2
CACAGCC
None
None
JACATO010000013.1
409822
409878
+
N. pompilius
Protostomia
Unknown
1
Tca-Mir-2-P1-v1
tca-mir-2-3
MIR-2
CACAGCC
MIMAT0019093
MIMAT0008353
LG3
560832
560890
+
Arthropoda
Protostomia
No
1
Dme-Mir-2-P1-v1
dme-mir-2c
MIR-2
CACAGCC
MIMAT0020845
MIMAT0000411
3R
15417760
15417826
-
Arthropoda
Protostomia
No
Dsi-Mir-2-P1-v1
dsi-mir-2c
MIR-2
CACAGCC
None
MIMAT0008854
3R
9985314
9985380
+
Arthropoda
Protostomia
No
Dya-Mir-2-P1-v1
dya-mir-2c
MIR-2
CACAGCC
None
MIMAT0009097
3R
15188380
15188446
+
Arthropoda
Protostomia
No
Dan-Mir-2-P1-v1
dan-mir-2c
MIR-2
CACAGCC
None
MIMAT0008442
scaffold_13340
12827849
12827913
-
Arthropoda
Protostomia
No
Esc-Mir-2-o20-v1
None
MIR-2
CACAGCC
None
None
Esc-Mir-2-o20-v1_pre_SRIE01000454.1:381798-382057
101
160
+
Cephalopoda
Protostomia
No
1
Obi-Mir-2-o20-v1
None
MIR-2
CACAGCC
None
None
KQ419829
51363
51423
-
Cephalopoda
Protostomia
No
1
Ovu-Mir-2-o20-v1
None
MIR-2
CACAGCC
None
None
RXHP01057295.1
23280
23340
-
Cephalopoda
Protostomia
No
1
Esc-Mir-2-o23-v1
None
MIR-2
CACAGCC
None
None
Esc-Mir-2-o23-v1_pre_SRIE01000454.1:384530-384793
101
164
+
Cephalopoda
Protostomia
No
1
1
Ovu-Mir-2-o23-v1
None
MIR-2
CACAGCC
None
None
RXHP01057295.1
21562
21620
-
Cephalopoda
Protostomia
No
1
1
Aae-Mir-2-P1-v2
aae-mir-2c
MIR-2
CACAGCC
None
MIMAT0014308
supercont1.268
889091
889155
-
Arthropoda
Protostomia
No
Hme-Mir-2-P3-v2
hme-mir-2b
MIR-2
CACAGCC
None
MIMAT0024972
HE671256
344897
344955
+
Arthropoda
Protostomia
No
1
1
Tca-Mir-2-P3-v2
tca-mir-2-1
MIR-2
CACAGCC
MIMAT0019094
MIMAT0008353
LG3
561198
561260
+
Arthropoda
Protostomia
No
1
Aae-Mir-2-P4-v2
aae-mir-2b
MIR-2
CACAGCC
None
MIMAT0014306
supercont1.268
887257
887317
-
Arthropoda
Protostomia
No
Tca-Mir-2-P4-v2
tca-mir-2-2
MIR-2
CACAGCC
MIMAT0019096
MIMAT0008353
LG3
561348
561412
+
Arthropoda
Protostomia
No
1
Bge-Mir-2-P4d-v2
None
MIR-2
CACAGCC
None
None
KZ615436.1
350982
351043
-
B. germanica
Protostomia
No
1
1
Dmo-Mir-2-P4a-v2
dmo-mir-2a-1
MIR-2
CACAGCC
None
MIMAT0008672
scaffold_6500
6908329
6908396
+
Drosophila
Protostomia
No
1
Dme-Mir-2-P4a-v2
dme-mir-2a-1
MIR-2
CACAGCC
MIMAT0020780
MIMAT0000106
2L
19569901
19569966
-
Drosophila
Protostomia
No
1
Dsi-Mir-2-P4a-v2
dsi-mir-2a-1
MIR-2
CACAGCC
None
MIMAT0008853
2L
19065589
19065654
-
Drosophila
Protostomia
No
1
Dya-Mir-2-P4a-v2
dya-mir-2a-1
MIR-2
CACAGCC
None
MIMAT0009106
2R
6066959
6067024
-
Drosophila
Protostomia
No
1
Dan-Mir-2-P4a-v2
dan-mir-2a-1
MIR-2
CACAGCC
None
MIMAT0008414
scaffold_12916
12013671
12013735
+
Drosophila
Protostomia
No
1
Dme-Mir-2-P4b-v2
dme-mir-2a-2
MIR-2
CACAGCC
MIMAT0020781
MIMAT0000106
2L
19569495
19569554
-
Drosophila
Protostomia
No
Dsi-Mir-2-P4b-v2
dsi-mir-2a-2
MIR-2
CACAGCC
None
MIMAT0008853
2L
19065170
19065229
-
Drosophila
Protostomia
No
Dya-Mir-2-P4b-v2
dya-mir-2a-2
MIR-2
CACAGCC
None
MIMAT0009106
2R
6066569
6066628
-
Drosophila
Protostomia
No
Dan-Mir-2-P4b-v2
dan-mir-2a-2
MIR-2
CACAGCC
None
MIMAT0008414
scaffold_12916
12013993
12014052
+
Drosophila
Protostomia
No
Download sequences for:
precursor
|
5p
|
3p
|
mature
|
star
|
mature/star
|
loop
|
extend_pre
|
all