MirGeneDB ID | Aca-Mir-490 |
Family name |
MIR-490 (all species) |
Seed |
AACCUGG |
Species |
Green anole lizard (Anolis carolinensis) |
MiRBase ID |
aca-mir-490
|
Paralogues |
|
Orthologues |
Ami-Mir-490
Bta-Mir-490
Cfa-Mir-490
Cja-Mir-490
Cli-Mir-490
Cpi-Mir-490
Cpo-Mir-490
Dno-Mir-490
Eca-Mir-490
Ete-Mir-490
Gga-Mir-490
Gja-Mir-490
Hsa-Mir-490
Laf-Mir-490
Mdo-Mir-490
Mml-Mir-490
Mmr-Mir-490
Mmu-Mir-490
Neu-Mir-490
Oan-Mir-490
Ocu-Mir-490
Pab-Mir-490
Pbv-Mir-490
Rno-Mir-490
Sha-Mir-490
Spt-Mir-490
Tgu-Mir-490
|
Node of Origin (locus) |
Amniota
|
Node of Origin (family) |
Amniota
|
Genome context (anoCar2) |
GL343419.1: 442482-442543 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AUGCUGGUUUGAUAUGUUCAUGCCUCAACACCAUGGAUCUCCAGGUGGGUCAAGAUUAUAGAGAAACACCAACCUGGAGGACUCCAUGCUGUUGAGCUGUUCACAAGCUACAAGAACCAAUU
Get precursor sequence
|
Structure | 10 20 30 40 50
AUGCUGGUUUGAUAUGUUCAU---- C C --| G CAAGAUUA
G CUCAACA CAUGGA UCUCCAGGU GGU \
C GAGUUGU GUACCU GGAGGUCCA CCA U
UUAACCAAGAACAUCGAACACUUGU - C CA^ A CAAAGAGA
120 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Aca-Mir-490_5p* |
mirBase accession | MIMAT0021976 |
Sequence |
0- CCAUGGAUCUCCAGGUGGGU -20
Get sequence
|
Mature sequence |
Aca-Mir-490_3p |
mirBase accession | MIMAT0021977 |
Sequence |
39- CAACCUGGAGGACUCCAUGCUGU -62
Get sequence
|