MirGeneDB 3.0

MirGeneDB ID

Cja-Mir-490

Family name MIR-490 (all species)
Seed AACCUGG
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-490  Ami-Mir-490  Bta-Mir-490  Cfa-Mir-490  Cli-Mir-490  Cpi-Mir-490  Cpo-Mir-490  Dno-Mir-490  Eca-Mir-490  Ete-Mir-490  Gga-Mir-490  Gja-Mir-490  Hsa-Mir-490  Laf-Mir-490  Mdo-Mir-490  Mml-Mir-490  Mmr-Mir-490  Mmu-Mir-490  Neu-Mir-490  Oan-Mir-490  Ocu-Mir-490  Pab-Mir-490  Pbv-Mir-490  Rno-Mir-490  Sha-Mir-490  Spt-Mir-490  Tgu-Mir-490 
Node of Origin (locus) Amniota
Node of Origin (family) Amniota
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)
CM021922.1: 107654047-107654107 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUUGCUGGUUUGGAAAGUUCAUUGUUCGACACCAUGGAUCUCCAGGUGGGUCAAGUUUAGAGAUGCACCAACCUGGAGGACUCCAUGCUGUUGAGCUGUUCACACGCAGCGGACACUUCCA
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Structure
        10        20          30          40        50         
CUUGCUGGUUUGGAAAGUUCAUU--        C      --|        G   CAAGUUU 
                         GUUCGACA CAUGGA  UCUCCAGGU GGU       \
                         CGAGUUGU GUACCU  GGAGGUCCA CCA       A
ACCUUCACAGGCGACGCACACUUGU        C      CA^        A   CGUAGAG 
 .       110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Cja-Mir-490_5p* (predicted)

mirBase accessionNone
Sequence
0- ACCAUGGAUCUCCAGGUGGGU -21
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Mature sequence

Cja-Mir-490_3p (predicted)

mirBase accessionNone
Sequence
38- CAACCUGGAGGACUCCAUGCUGU -61
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