| MirGeneDB ID | Cja-Mir-490 |
|---|---|
| Family name | MIR-490 (all species) |
| Seed | AACCUGG |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Aca-Mir-490 Ami-Mir-490 Bta-Mir-490 Cfa-Mir-490 Cli-Mir-490 Cpi-Mir-490 Cpo-Mir-490 Dno-Mir-490 Eca-Mir-490 Ete-Mir-490 Gga-Mir-490 Gja-Mir-490 Hsa-Mir-490 Laf-Mir-490 Mdo-Mir-490 Mml-Mir-490 Mmr-Mir-490 Mmu-Mir-490 Neu-Mir-490 Oan-Mir-490 Ocu-Mir-490 Pab-Mir-490 Pbv-Mir-490 Rno-Mir-490 Sha-Mir-490 Spt-Mir-490 Tgu-Mir-490 |
| Node of Origin (locus) | Amniota |
| Node of Origin (family) | Amniota |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021922.1: 107654047-107654107 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | CUUGCUGGUUUGGAAAGUUCAUUGUUCGACACCAUGGAUCUCCAGGUGGGUCAAGUUUAGAGAUGCACCAACCUGGAGGACUCCAUGCUGUUGAGCUGUUCACACGCAGCGGACACUUCCAGet precursor sequence |
| Structure | 10 20 30 40 50 CUUGCUGGUUUGGAAAGUUCAUU-- C --| G CAAGUUU GUUCGACA CAUGGA UCUCCAGGU GGU \ CGAGUUGU GUACCU GGAGGUCCA CCA A ACCUUCACAGGCGACGCACACUUGU C CA^ A CGUAGAG . 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Cja-Mir-490_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- ACCAUGGAUCUCCAGGUGGGU -21
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|
| Mature sequence | Cja-Mir-490_3p (predicted) |
| mirBase accession | None |
| Sequence |
38- CAACCUGGAGGACUCCAUGCUGU -61
Get sequence
|
