MirGeneDB ID | Eca-Mir-490 |
Family name |
MIR-490 (all species) |
Seed |
AACCUGG |
Species |
Horse (Equus caballus) |
MiRBase ID |
eca-mir-490
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Paralogues |
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Orthologues |
Aca-Mir-490
Ami-Mir-490
Bta-Mir-490
Cfa-Mir-490
Cja-Mir-490
Cli-Mir-490
Cpi-Mir-490
Cpo-Mir-490
Dno-Mir-490
Ete-Mir-490
Gga-Mir-490
Gja-Mir-490
Hsa-Mir-490
Laf-Mir-490
Mdo-Mir-490
Mml-Mir-490
Mmr-Mir-490
Mmu-Mir-490
Neu-Mir-490
Oan-Mir-490
Ocu-Mir-490
Pab-Mir-490
Pbv-Mir-490
Rno-Mir-490
Sha-Mir-490
Spt-Mir-490
Tgu-Mir-490
|
Node of Origin (locus) |
Amniota
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Node of Origin (family) |
Amniota
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Genome context (GCA_002863925.1_EquCab3.0) |
CM009151.1: 90886536-90886595 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUGCUGGUUUGCAAAGUUCAUUGUUCGACACCAUGGAUCUCCAGGUGGGUCACGUUUAGAGAUACACCAACCUGGAGGACUCCAUGCUGUUGAGCUGUUCACAAGCAGCGGACACUUCUA
Get precursor sequence
|
Structure | 10 20 30 40 50
UUGCUGGUUUGCAAAGUUCAUU--- C --| G CACGUUU
GUUCGACA CAUGGA UCUCCAGGU GGU \
CGAGUUGU GUACCU GGAGGUCCA CCA A
AUCUUCACAGGCGACGAACACUUGU C CA^ A CAUAGAG
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
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Motifs | CNNC at 3p(+17) |
Tissue expression
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Ps |
Bo |
Ca |
Em |
En |
En |
En |
En |
En |
En |
En |
Gl |
He |
He |
Ho |
Im |
Ki |
Li |
Lo |
Lu |
Ma |
Ma |
Mi |
Pl |
Sp |
Te |
Tr |
Ut |
Ut |
Yo |
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Star sequence |
Eca-Mir-490_5p* |
mirBase accession | MIMAT0012944 |
Sequence |
0- CCAUGGAUCUCCAGGUGGGU -20
Get sequence
|
Mature sequence |
Eca-Mir-490_3p |
mirBase accession | MIMAT0012945 |
Sequence |
37- CAACCUGGAGGACUCCAUGCUGU -60
Get sequence
|