MirGeneDB ID | Pab-Mir-490 |
---|---|
Family name | MIR-490 (all species) |
Seed | AACCUGG |
Species | Sumatran orangutan (Pongo abelii) |
MiRBase ID | |
Paralogues | |
Orthologues | Aca-Mir-490 Ami-Mir-490 Bta-Mir-490 Cfa-Mir-490 Cja-Mir-490 Cli-Mir-490 Cpi-Mir-490 Cpo-Mir-490 Dno-Mir-490 Eca-Mir-490 Ete-Mir-490 Gga-Mir-490 Gja-Mir-490 Hsa-Mir-490 Laf-Mir-490 Mdo-Mir-490 Mml-Mir-490 Mmr-Mir-490 Mmu-Mir-490 Neu-Mir-490 Oan-Mir-490 Ocu-Mir-490 Pbv-Mir-490 Rno-Mir-490 Sha-Mir-490 Spt-Mir-490 Tgu-Mir-490 |
Node of Origin (locus) | Amniota |
Node of Origin (family) | Amniota |
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054685.2: 134297719-134297778 [+] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | UUGCUGGUUUGGAAAGUUCAUUGUUCGACACCAUGGAUCUCCAGGUGGGUCAAGUUUAGAGAUGCACCAACCUGGAGGACUCCAUGCUGUUGAGCUGUUCACAAGCAGCGGACACUUCCAGet precursor sequence |
Structure | 10 20 30 40 50 UUGCUGGUUUGGAAAGUUCAUU--- C --| G CAAGUUU GUUCGACA CAUGGA UCUCCAGGU GGU \ CGAGUUGU GUACCU GGAGGUCCA CCA A ACCUUCACAGGCGACGAACACUUGU C CA^ A CGUAGAG . 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | No |
Motifs | CNNC at 3p(+17) |
Star sequence | Pab-Mir-490_5p* |
mirBase accession | None |
Sequence |
0- CCAUGGAUCUCCAGGUGGGU -20
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|
Mature sequence | Pab-Mir-490_3p |
mirBase accession | None |
Sequence |
37- CAACCUGGAGGACUCCAUGCUGU -60
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