MirGeneDB 3.0

MirGeneDB ID

Laf-Mir-490

Family name MIR-490 (all species)
Seed AACCUGG
Species African bush elephant (Loxodonta africana)
MiRBase ID
Paralogues
Orthologues Aca-Mir-490  Ami-Mir-490  Bta-Mir-490  Cfa-Mir-490  Cja-Mir-490  Cli-Mir-490  Cpi-Mir-490  Cpo-Mir-490  Dno-Mir-490  Eca-Mir-490  Ete-Mir-490  Gga-Mir-490  Gja-Mir-490  Hsa-Mir-490  Mdo-Mir-490  Mml-Mir-490  Mmr-Mir-490  Mmu-Mir-490  Neu-Mir-490  Oan-Mir-490  Ocu-Mir-490  Pab-Mir-490  Pbv-Mir-490  Rno-Mir-490  Sha-Mir-490  Spt-Mir-490  Tgu-Mir-490 
Node of Origin (locus) Amniota
Node of Origin (family) Amniota
Genome context
(GCA_000001905.1_Loxafr3.0)
GL010110.1: 5718024-5718083 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUGCUGGUUUGGAAAUUACAUGGUUCGACACCAUGGAUCUCCAGGUGGGUCACGGUUACAGGUACACCAACCUGGAGGACUCCAUGCUGUUGAGCUGUUCACAAGCAGCGGACACUUCUA
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Structure
        10           20        30          40        50        
UUGCUGGUUUGGAAAUUAC---           C      --|        G   CACGGUU 
                      AUGGUUCGACA CAUGGA  UCUCCAGGU GGU       \
                      UGUCGAGUUGU GUACCU  GGAGGUCCA CCA       A
AUCUUCACAGGCGACGAACACU           C      CA^        A   CAUGGAC 
.       110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
Wh
Star sequence

Laf-Mir-490_5p* (predicted)

mirBase accessionNone
Sequence
0- CCAUGGAUCUCCAGGUGGGU -20
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Mature sequence

Laf-Mir-490_3p (predicted)

mirBase accessionNone
Sequence
37- CAACCUGGAGGACUCCAUGCUGU -60
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