MirGeneDB 3.0

MirGeneDB ID

Spt-Mir-490

Family name MIR-490 (all species)
Seed AACCUGG
Species Tuatara (Sphenodon punctatus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-490  Ami-Mir-490  Bta-Mir-490  Cfa-Mir-490  Cja-Mir-490  Cli-Mir-490  Cpi-Mir-490  Cpo-Mir-490  Dno-Mir-490  Eca-Mir-490  Ete-Mir-490  Gga-Mir-490  Gja-Mir-490  Hsa-Mir-490  Laf-Mir-490  Mdo-Mir-490  Mml-Mir-490  Mmr-Mir-490  Mmu-Mir-490  Neu-Mir-490  Oan-Mir-490  Ocu-Mir-490  Pab-Mir-490  Pbv-Mir-490  Rno-Mir-490  Sha-Mir-490  Tgu-Mir-490 
Node of Origin (locus) Amniota
Node of Origin (family) Amniota
Genome context
(GCA_003113815.1_ASM311381v1_TUATARA)
QEPC01008412.1: 243811-243872 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGUGCUGGCUUAUAAGUUCAUGGUUCGACACCAUGGAUCUCCAGGUGGGUCAAGAGUAUAGAGAAACACCAACCUGGAGGACUCCAUGCUGUUGAGCUGUUCACAAGCAGCGGAACCCCAUG
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Structure
        10           20        30          40        50         
AGUGCUGGCUUAUAAGUUC---           C      --|        G   CAAGAGUA 
                      AUGGUUCGACA CAUGGA  UCUCCAGGU GGU        \
                      UGUCGAGUUGU GUACCU  GGAGGUCCA CCA        U
GUACCCCAAGGCGACGAACACU           C      CA^        A   CAAAGAGA 
120       110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Star sequence

Spt-Mir-490_5p* (predicted)

mirBase accessionNone
Sequence
0- CCAUGGAUCUCCAGGUGGGU -20
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Mature sequence

Spt-Mir-490_3p (predicted)

mirBase accessionNone
Sequence
39- CAACCUGGAGGACUCCAUGCUGU -62
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