| MirGeneDB ID | Tgu-Mir-490 |
|---|
| Family name |
MIR-490 (all species) |
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| Seed |
AACCUGG |
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| Species |
Zebra finch (Taeniopygia guttata) |
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| MiRBase ID |
tgu-mir-490-1
|
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| Paralogues |
|
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| Orthologues |
Aca-Mir-490
Ami-Mir-490
Bta-Mir-490
Cfa-Mir-490
Cja-Mir-490
Cli-Mir-490
Cpi-Mir-490
Cpo-Mir-490
Dno-Mir-490
Eca-Mir-490
Ete-Mir-490
Gga-Mir-490
Gja-Mir-490
Hsa-Mir-490
Laf-Mir-490
Mdo-Mir-490
Mml-Mir-490
Mmr-Mir-490
Mmu-Mir-490
Neu-Mir-490
Oan-Mir-490
Ocu-Mir-490
Pab-Mir-490
Pbv-Mir-490
Rno-Mir-490
Sha-Mir-490
Spt-Mir-490
|
|---|
| Node of Origin (locus) |
Amniota
|
|---|
| Node of Origin (family) |
Amniota
|
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Genome context
(TaeGut1_add) |
1A: 55597486-55597547 [+]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
GUGCUGUCUUCAUGAGUUCAUGCUUCGACACCAUGGAUCUCCAGGUGGGUCAAGAUUAUAGAGAUACACCAACCUGGAGGACUCCAUGCUGUCGAGCUGUUCAUAAGCAGCGGAAGGCAAUA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GUGCUGUCUUCAUGAGUUCAU---- U C --| G CAAGAUUA
GC UCGACA CAUGGA UCUCCAGGU GGU \
CG AGCUGU GUACCU GGAGGUCCA CCA U
AUAACGGAAGGCGACGAAUACUUGU - C CA^ A CAUAGAGA
120 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Tgu-Mir-490_5p* |
| mirBase accession | MIMAT0026996 |
|---|
| Sequence |
0- CCAUGGAUCUCCAGGUGGGU -20
Get sequence
|
|---|
| Mature sequence |
Tgu-Mir-490_3p |
| mirBase accession | MIMAT0014548 |
|---|
| Sequence |
39- CAACCUGGAGGACUCCAUGCUGU -62
Get sequence
|
|---|
