MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-2188

Family name MIR-2188 (all species)
Seed AGGUCCA
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-2188
Paralogues
Orthologues Aca-Mir-2188  Cli-Mir-2188  Cmi-Mir-2188  Cpi-Mir-2188  Dre-Mir-2188  Gga-Mir-2188  Gja-Mir-2188  Gmo-Mir-2188  Lch-Mir-2188  Loc-Mir-2188  Mal-Mir-2188  Mdo-Mir-2188  Mun-Mir-2188  Oan-Mir-2188  Pbv-Mir-2188  Sha-Mir-2188  Spt-Mir-2188  Sto-Mir-2188  Tgu-Mir-2188  Tni-Mir-2188  Xla-Mir-2188-P1  Xla-Mir-2188-P2  Xtr-Mir-2188 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017709304.1: 9754-9813 [+] UCSC
Precursor
(pre-Mir +30nt flank)
UCCACCCGGAGGAAUAUCAGACCCGUGGGAAAGGUCCAACCUCACAUGUCCUGUAUGUCACGAGGAGGGAUAUAUGUGGUCAGACCUAUCCCACAGGCCCUGUAUUCUUGCACACAUGCC
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Structure
        10         20         30        40        50         
UCCACCCGGAGGAAUAU-   A-| C      A     CA   U  C       GUAUGU 
                  CAG  CC GUGGGA AGGUC  ACC CA AUGUCCU      C
                  GUC  GG CACCCU UCCAG  UGG GU UAUAGGG      A
CCGUACACACGUUCUUAU   CC^ A      A     AC   U  A       AGGAGC 
.       110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut -1 relative to what is annotated here and the 3p read of the second cut is a Group 2 miRNA.
3' NTU No
MotifsNo
Tissue expression
-   +
To
Mature sequence

Ami-Mir-2188_5p
mirBase accessionMIMAT0038333
Sequence 
0- AAGGUCCAACCUCACAUGUCCU -22
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Star sequence

Ami-Mir-2188_3p*
mirBase accessionMIMAT0038334
Sequence 
38- GAUAUAUGUGGUCAGACCUAUC -60
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