MirGeneDB 3.0
MirGeneDB ID

Cli-Mir-2188

Family name MIR-2188 (all species)
Seed AGGUCCA
Species Rock pigeon (Columba livia)
MiRBase ID cli-mir-2188
Paralogues
Orthologues Aca-Mir-2188  Ami-Mir-2188  Cmi-Mir-2188  Cpi-Mir-2188  Dre-Mir-2188  Gga-Mir-2188  Gja-Mir-2188  Gmo-Mir-2188  Lch-Mir-2188  Loc-Mir-2188  Mal-Mir-2188  Mdo-Mir-2188  Mun-Mir-2188  Oan-Mir-2188  Pbv-Mir-2188  Sha-Mir-2188  Spt-Mir-2188  Sto-Mir-2188  Tgu-Mir-2188  Tni-Mir-2188  Xla-Mir-2188-P1  Xla-Mir-2188-P2  Xtr-Mir-2188 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(colLiv2)		 scaffold497: 1693231-1693290 [-]
Precursor
(pre-Mir +30nt flank)
UUCCUUCUGAGGAAUAUCAGACCUGUGGGAAAGGUCCAACCUCACAUGUCCUGUAUAGAAUAAAGAGGGAUAUAUGUGGUCAGACCUAUCCCACAGGCCCUGUAUUCUUACUCAAGUGCA
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Structure
        10         20         30        40        50         
UUCCUUCUGAGGAAUAU-   A-|        A     CA   U  C       GUAUAG 
                  CAG  CCUGUGGGA AGGUC  ACC CA AUGUCCU      A
                  GUC  GGACACCCU UCCAG  UGG GU UAUAGGG      A
ACGUGAACUCAUUCUUAU   CC^        A     AC   U  A       AGAAAU 
.       110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut -1 relative to what is annotated here and the 3p read of the second cut has a 3'NTU.
3' NTU No
MotifsNo
Tissue expression
-   +
Li Mi Ov Pe Te To
Mature sequence

Cli-Mir-2188_5p
mirBase accessionMIMAT0038709
Sequence 
0- AAGGUCCAACCUCACAUGUCCU -22
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Star sequence

Cli-Mir-2188_3p*
mirBase accessionMIMAT0038710
Sequence 
38- GAUAUAUGUGGUCAGACCUAUC -60
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