MirGeneDB 3.0
MirGeneDB ID

Tni-Mir-2188

Family name MIR-2188 (all species)
Seed AGGUCCA
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID
Paralogues
Orthologues Aca-Mir-2188  Ami-Mir-2188  Cli-Mir-2188  Cmi-Mir-2188  Cpi-Mir-2188  Dre-Mir-2188  Gga-Mir-2188  Gja-Mir-2188  Gmo-Mir-2188  Lch-Mir-2188  Loc-Mir-2188  Mal-Mir-2188  Mdo-Mir-2188  Mun-Mir-2188  Oan-Mir-2188  Pbv-Mir-2188  Sha-Mir-2188  Spt-Mir-2188  Sto-Mir-2188  Tgu-Mir-2188  Xla-Mir-2188-P1  Xla-Mir-2188-P2  Xtr-Mir-2188 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 12: 6747621-6747680 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACUCAGAGGAAUAAUAUCAGUGGUGUGGGAAAGGUCCAACCUCACAUGUCCUGUGCGGCUGAAGGAAGGCUGUGUGAGGUCAGACCUAUCCCACACGGCUCGUAUUCUUCCCAGCCACGA
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Structure
        10          20        30        40        50         
ACUCAGAGGAAUAAUAUC--|  G        A     CA          U   GUGCGG 
                    AGU GUGUGGGA AGGUC  ACCUCACAUG CCU      C
                    UCG CACACCCU UCCAG  UGGAGUGUGU GGA      U
AGCACCGACCCUUCUUAUGC^  G        A     AC          C   AGGAAG 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Sp Sp Sp To
Mature sequence

Tni-Mir-2188_5p
mirBase accessionNone
Sequence 
0- AAGGUCCAACCUCACAUGUCCU -22
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Star sequence

Tni-Mir-2188_3p*
mirBase accessionNone
Sequence 
38- GCUGUGUGAGGUCAGACCUAUC -60
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