MirGeneDB 3.0
MirGeneDB ID

Gga-Mir-2188

Family name MIR-2188 (all species)
Seed AGGUCCA
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-2188
Paralogues
Orthologues Aca-Mir-2188  Ami-Mir-2188  Cli-Mir-2188  Cmi-Mir-2188  Cpi-Mir-2188  Dre-Mir-2188  Gja-Mir-2188  Gmo-Mir-2188  Lch-Mir-2188  Loc-Mir-2188  Mal-Mir-2188  Mdo-Mir-2188  Mun-Mir-2188  Oan-Mir-2188  Pbv-Mir-2188  Sha-Mir-2188  Spt-Mir-2188  Sto-Mir-2188  Tgu-Mir-2188  Tni-Mir-2188  Xla-Mir-2188-P1  Xla-Mir-2188-P2  Xtr-Mir-2188 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(Gallus_gallus.GRCg6a)		 22: 2948515-2948574 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUCCUUCUGAGGAAUAUCAGACCUGUGGGAAAGGUCCAACCUCACAUGUCCUGUAUAGAAUAAGGAGGGAUAUAUGUGGUCAGACCUAUCCCACAGGCCCUGUAUUCUUACACAAGUGCA
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Structure
        10         20         30        40        50         
UUCCUUCUGAGGAAUAU-   A-|        A     CA   U  C       GUAUAG 
                  CAG  CCUGUGGGA AGGUC  ACC CA AUGUCCU      A
                  GUC  GGACACCCU UCCAG  UGG GU UAUAGGG      A
ACGUGAACACAUUCUUAU   CC^        A     AC   U  A       AGGAAU 
.       110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut -1 relative to what is annotated here and the 3p read of the second cut has a 3'NTU.
3' NTU No
MotifsNo
Tissue expression
-   +
Ad Ad Ad Br Br Ce Ce Ce Ce Gg He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Mature sequence

Gga-Mir-2188_5p
mirBase accessionMIMAT0016372
Sequence 
0- AAGGUCCAACCUCACAUGUCCU -22
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Proposed targets TargetScanVert: gga-miR-2188-5p
miRDB: MIMAT0016372
Star sequence

Gga-Mir-2188_3p*
mirBase accessionMIMAT0027028
Sequence 
38- GAUAUAUGUGGUCAGACCUAUC -60
Get sequence
Proposed targets TargetScanVert: gga-miR-2188-3p
miRDB: MIMAT0027028