Mir-455-v2

MirGeneDB ID

Cfa-Mir-455-v2

Family name

MIR-455 (all species)

Seed

CAGUCCA

Species

Dog (Canis familiaris)

MiRBase ID

cfa-mir-455

Paralogues

Cfa-Mir-455-v1 Cfa-Mir-455-v3

Orthologues

Aca-Mir-455-v2 Ami-Mir-455-v2 Bta-Mir-455-v2 Cja-Mir-455-v2 Cli-Mir-455-v2 Cmi-Mir-455-v2 Cpi-Mir-455-v2 Cpo-Mir-455-v2 Dno-Mir-455-v2 Ebu-Mir-455-v2 Eca-Mir-455-v2 Ete-Mir-455-v2 Gga-Mir-455-v2 Gja-Mir-455 Hsa-Mir-455-v2 Laf-Mir-455-v2 Lch-Mir-455 Loc-Mir-455-v2 Mdo-Mir-455-v2 Mml-Mir-455-v2 Mmr-Mir-455-v2 Mmu-Mir-455-v2 Mun-Mir-455 Oan-Mir-455-v2 Ocu-Mir-455-v2 Pab-Mir-455-v2 Pbv-Mir-455 Pma-Mir-455 Rno-Mir-455-v2 Sha-Mir-455-v2 Spt-Mir-455 Sto-Mir-455-v2 Tgu-Mir-455-v2 Xtr-Mir-455

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(canFam3_add)

chr11: 68461910-68461969 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-455-v2)

Mir-455-v2 chr11: 68461910-68461969 [+] UCSC Ensembl
Mir-455-v3 chr11: 68461910-68461969 [+] UCSC Ensembl
Mir-455-v1 chr11: 68461911-68461968 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGAGCGCCCGCGCCCUUCCCUGGCGUGAGGGUAUGUGCCUUUGGACUACAUCGUGGAAGCCAGCACCAUGCAGUCCAUGGGCAUAUACACUUGCCUCAAGGCCUGUGUCGUCGAGGAGUC

Get precursor sequence

Structure

        10          20        30        40        50         
AGAGCGCCCGCGCCCUU--| C   C UG  G          U      A   CGUGGAA 
                   CC UGG G  AG GUAUGUGCCU UGGACU CAU       G
                   GG ACU C  UC CAUAUACGGG ACCUGA GUA       C
CUGAGGAGCUGCUGUGUCC^ A   C GU  A          U      C   CCACGAC 
.       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Yes

Motifs

Tissue expression

An	An	An	Bl	Ce	Co	He	Hi	Hi	Hy	Ki	Ki	Li	Lu	Ov	Sk	Te	Te

Star sequence

Cfa-Mir-455-v2_5p*

mirBase accession

MIMAT0006603

Sequence

0- GUAUGUGCCUUUGGACUACAU -21

Get sequence

Proposed targets

TargetScanVert: cfa-miR-455
miRDB: MIMAT0006603

Mature sequence

Cfa-Mir-455-v2_3p

mirBase accession

None

Sequence

39- GCAGUCCAUGGGCAUAUACAC -60

Get sequence