MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-455-v2

Family name MIR-455 (all species)
Seed CAGUCCA
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-455
Paralogues Rno-Mir-455-v1  Rno-Mir-455-v3 
Orthologues Aca-Mir-455-v2  Ami-Mir-455-v2  Bta-Mir-455-v2  Cfa-Mir-455-v2  Cja-Mir-455-v2  Cli-Mir-455-v2  Cmi-Mir-455-v2  Cpi-Mir-455-v2  Cpo-Mir-455-v2  Dno-Mir-455-v2  Ebu-Mir-455-v2  Eca-Mir-455-v2  Ete-Mir-455-v2  Gga-Mir-455-v2  Gja-Mir-455  Hsa-Mir-455-v2  Laf-Mir-455-v2  Lch-Mir-455  Loc-Mir-455-v2  Mdo-Mir-455-v2  Mml-Mir-455-v2  Mmr-Mir-455-v2  Mmu-Mir-455-v2  Mun-Mir-455  Oan-Mir-455-v2  Ocu-Mir-455-v2  Pab-Mir-455-v2  Pbv-Mir-455  Pma-Mir-455  Sha-Mir-455-v2  Spt-Mir-455  Sto-Mir-455-v2  Tgu-Mir-455-v2  Xtr-Mir-455 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(rn6)		 chr5: 79097217-79097275 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-455-v2)		 Mir-455-v2 chr5: 79097217-79097275 [+] UCSC Ensembl
Mir-455-v3 chr5: 79097217-79097275 [+] UCSC Ensembl
Mir-455-v1 chr5: 79097218-79097274 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUGUCCUGUGCUGCCCUCCCUGGUGUGAGCGUAUGUGCCUUUGGACUACAUCGUGGACGCAGCACCAUGCAGUCCACGGGCAUAUACACUUGCCUCAAGGUCUAUGUCAUCGAGGACCC
Get precursor sequence
Structure
        10          20        30        40        50         
CUGUCCUGUGCUGCCCU--| C   U UG  C          U      A   CGUGGAC 
                   CC UGG G  AG GUAUGUGCCU UGGACU CAU       \
                   GG ACU C  UC CAUAUACGGG ACCUGA GUA       G
CCCAGGAGCUACUGUAUCU^ A   C GU  A          C      C   CCACGAC 
       110       100        90        80        70        60
Deep sequencing
3' NTU Yes
MotifsNo
Tissue expression
-   +
Ad Ad Br Br Br Ce Ce Ce Ce Co Co Co Co Dr Dr Du Du Du Du He He Hi Hi Il Il Je Je Ki Ki Ki Ki Li Li Li Li Me Me Mu Mu Mu Mu Mu Mu Mu Mu Ov Pa Pa St St St Te Ut Wh Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Star sequence

Rno-Mir-455-v2_5p*
mirBase accessionMIMAT0005316
Sequence 
0- GUAUGUGCCUUUGGACUACAU -21
Get sequence
Proposed targets microrna.org: MIMAT0005316
TargetScanVert: rno-miR-455-5p
miRDB: MIMAT0005316
Mature sequence

Rno-Mir-455-v2_3p
mirBase accessionMIMAT0017308
Sequence 
38- GCAGUCCACGGGCAUAUACAC -59
Get sequence
Proposed targets TargetScanVert: rno-miR-455-3p
miRDB: MIMAT0017308