Mir-455-v3

MirGeneDB ID

Rno-Mir-455-v3

Family name

MIR-455 (all species)

Seed

GCAGUCC

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-455

Paralogues

Rno-Mir-455-v1 Rno-Mir-455-v2

Orthologues

Aca-Mir-455-v3 Ami-Mir-455-v3 Bta-Mir-455-v3 Cfa-Mir-455-v3 Cja-Mir-455-v3 Cli-Mir-455-v3 Cmi-Mir-455-v3 Cpi-Mir-455-v3 Cpo-Mir-455-v3 Dno-Mir-455-v3 Ebu-Mir-455-v3 Eca-Mir-455-v3 Ete-Mir-455-v3 Gga-Mir-455-v3 Gja-Mir-455 Hsa-Mir-455-v3 Laf-Mir-455-v3 Lch-Mir-455 Loc-Mir-455-v3 Mdo-Mir-455-v3 Mml-Mir-455-v3 Mmr-Mir-455-v3 Mmu-Mir-455-v3 Mun-Mir-455 Oan-Mir-455-v3 Ocu-Mir-455-v3 Pab-Mir-455-v3 Pbv-Mir-455 Pma-Mir-455 Sha-Mir-455-v3 Spt-Mir-455 Sto-Mir-455-v3 Tgu-Mir-455-v3 Xtr-Mir-455

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(rn6)

chr5: 79097217-79097275 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-455-v3)

Mir-455-v2 chr5: 79097217-79097275 [+] UCSC Ensembl
Mir-455-v3 chr5: 79097217-79097275 [+] UCSC Ensembl
Mir-455-v1 chr5: 79097218-79097274 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUGUCCUGUGCUGCCCUCCCUGGUGUGAGCGUAUGUGCCUUUGGACUACAUCGUGGACGCAGCACCAUGCAGUCCACGGGCAUAUACACUUGCCUCAAGGUCUAUGUCAUCGAGGACCC

Get precursor sequence

Structure

        10          20        30        40        50         
CUGUCCUGUGCUGCCCU--| C   U UG  C          U      A   CGUGGAC 
                   CC UGG G  AG GUAUGUGCCU UGGACU CAU       \
                   GG ACU C  UC CAUAUACGGG ACCUGA GUA       G
CCCAGGAGCUACUGUAUCU^ A   C GU  A          C      C   CCACGAC 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Yes

Motifs

UGUG in loop

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Star sequence

Rno-Mir-455-v3_5p*

mirBase accession

MIMAT0005316

Sequence

0- GUAUGUGCCUUUGGACUACAUC -22

Get sequence

Proposed targets

microrna.org: MIMAT0005316
TargetScanVert: rno-miR-455-5p
miRDB: MIMAT0005316

Mature sequence

Rno-Mir-455-v3_3p

mirBase accession

MIMAT0017308

Sequence

37- UGCAGUCCACGGGCAUAUACAC -59

Get sequence

Proposed targets

TargetScanVert: rno-miR-455-3p
miRDB: MIMAT0017308