MirGeneDB 3.0
MirGeneDB ID

Sha-Mir-455-v3

Family name MIR-455 (all species)
Seed GCAGUCC
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID
Paralogues Sha-Mir-455-v1  Sha-Mir-455-v2 
Orthologues Aca-Mir-455-v3  Ami-Mir-455-v3  Bta-Mir-455-v3  Cfa-Mir-455-v3  Cja-Mir-455-v3  Cli-Mir-455-v3  Cmi-Mir-455-v3  Cpi-Mir-455-v3  Cpo-Mir-455-v3  Dno-Mir-455-v3  Ebu-Mir-455-v3  Eca-Mir-455-v3  Ete-Mir-455-v3  Gga-Mir-455-v3  Gja-Mir-455  Hsa-Mir-455-v3  Laf-Mir-455-v3  Lch-Mir-455  Loc-Mir-455-v3  Mdo-Mir-455-v3  Mml-Mir-455-v3  Mmr-Mir-455-v3  Mmu-Mir-455-v3  Mun-Mir-455  Oan-Mir-455-v3  Ocu-Mir-455-v3  Pab-Mir-455-v3  Pbv-Mir-455  Pma-Mir-455  Rno-Mir-455-v3  Spt-Mir-455  Sto-Mir-455-v3  Tgu-Mir-455-v3  Xtr-Mir-455 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(DEVIL_add)		 GL834651.1: 1728045-1728104 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCCAGCCUGCCCCCAAUCCCUGGUGUGAGGGUAUGUGCCCUUGGACUACAUCGUGGAAGCCAGCACCAUGCAGUCCAUGGGCAUAUACACUUGCCUCAAGGUUUAUGUCAACGUGGAGCA
Get precursor sequence
Structure
        10          20        30        40        50         
CCCAGCCUGCCCCCAAU--| C   U UG  G          U      A   CGUGGAA 
                   CC UGG G  AG GUAUGUGCCC UGGACU CAU       G
                   GG ACU C  UC CAUAUACGGG ACCUGA GUA       C
ACGAGGUGCAACUGUAUUU^ A   C GU  A          U      C   CCACGAC 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU Yes
MotifsUGUG in loop
Tissue expression
-   +
Bo Br He Ki Li Ly Pa Sk Sp Te
Star sequence

Sha-Mir-455-v3_5p*
mirBase accessionNone
Sequence 
0- GUAUGUGCCCUUGGACUACAUC -22
Get sequence
Mature sequence

Sha-Mir-455-v3_3p
mirBase accessionNone
Sequence 
38- UGCAGUCCAUGGGCAUAUACAC -60
Get sequence