MirGeneDB ID | Cmi-Mir-455-v3 |
Family name |
MIR-455 (all species) |
Seed |
GCAGUCC |
Species |
Australian ghostshark (Callorhinchus milii) |
MiRBase ID |
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Paralogues |
Cmi-Mir-455-v1
Cmi-Mir-455-v2
|
Orthologues |
Aca-Mir-455-v3
Ami-Mir-455-v3
Bta-Mir-455-v3
Cfa-Mir-455-v3
Cja-Mir-455-v3
Cli-Mir-455-v3
Cpi-Mir-455-v3
Cpo-Mir-455-v3
Dno-Mir-455-v3
Ebu-Mir-455-v3
Eca-Mir-455-v3
Ete-Mir-455-v3
Gga-Mir-455-v3
Gja-Mir-455
Hsa-Mir-455-v3
Laf-Mir-455-v3
Lch-Mir-455
Loc-Mir-455-v3
Mdo-Mir-455-v3
Mml-Mir-455-v3
Mmr-Mir-455-v3
Mmu-Mir-455-v3
Mun-Mir-455
Oan-Mir-455-v3
Ocu-Mir-455-v3
Pab-Mir-455-v3
Pbv-Mir-455
Pma-Mir-455
Rno-Mir-455-v3
Sha-Mir-455-v3
Spt-Mir-455
Sto-Mir-455-v3
Tgu-Mir-455-v3
Xtr-Mir-455
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_000165045.2_Callorhinchus_milii-6.1.3) |
KI635931.1: 2028086-2028145 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GGCAGAGGCAACUCGAUCCCUGGUGUGAGGGUAUGUGCCCUUGGACUACAUCGUGGAAGCCAGCACCAUGCAGUCCAUGGGCAUAUACACUUGCCUCAAGGCUUUGUUCAUCACCUGCAC
Get precursor sequence
|
Structure | 10 20 30 40 50
GGCAGAGGCAACUCGAU--| C U UG G U A CGUGGAA
CC UGG G AG GUAUGUGCCC UGGACU CAU G
GG ACU C UC CAUAUACGGG ACCUGA GUA C
CACGUCCACUACUUGUUUC^ A C GU A U C CCACGAC
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Yes
|
Motifs | UGUG in loop |
Tissue expression
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Bl |
Br |
Ey |
Gi |
He |
In |
Ki |
Li |
Mu |
Ov |
Pa |
Re |
Sk |
Sp |
Te |
Ut |
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Star sequence |
Cmi-Mir-455-v3_5p* |
mirBase accession | None |
Sequence |
0- GUAUGUGCCCUUGGACUACAUC -22
Get sequence
|
Mature sequence |
Cmi-Mir-455-v3_3p |
mirBase accession | None |
Sequence |
38- UGCAGUCCAUGGGCAUAUACAC -60
Get sequence
|