MirGeneDB ID | Loc-Mir-455-v3 |
Family name |
MIR-455 (all species) |
Seed |
GCAGUCC |
Species |
Spotted gar (Lepisosteus oculatus) |
MiRBase ID |
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Paralogues |
Loc-Mir-455-v1
Loc-Mir-455-v2
|
Orthologues |
Aca-Mir-455-v3
Ami-Mir-455-v3
Bta-Mir-455-v3
Cfa-Mir-455-v3
Cja-Mir-455-v3
Cli-Mir-455-v3
Cmi-Mir-455-v3
Cpi-Mir-455-v3
Cpo-Mir-455-v3
Dno-Mir-455-v3
Ebu-Mir-455-v3
Eca-Mir-455-v3
Ete-Mir-455-v3
Gga-Mir-455-v3
Gja-Mir-455
Hsa-Mir-455-v3
Laf-Mir-455-v3
Lch-Mir-455
Mdo-Mir-455-v3
Mml-Mir-455-v3
Mmr-Mir-455-v3
Mmu-Mir-455-v3
Mun-Mir-455
Oan-Mir-455-v3
Ocu-Mir-455-v3
Pab-Mir-455-v3
Pbv-Mir-455
Pma-Mir-455
Rno-Mir-455-v3
Sha-Mir-455-v3
Spt-Mir-455
Sto-Mir-455-v3
Tgu-Mir-455-v3
Xtr-Mir-455
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
|
Genome context (LepOcu1) |
LG21: 4558779-4558838 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UGGACAACUCCAUUGAUCCCUGGUGUGAGGGUAUGUGCCCUUGGACUACAUCGUGGAAGCCAGCACCAUGCAGUCCAUGGGCAUAUACACUUGCCUCAAGGCUUAGUUCUUCACGGAGAC
Get precursor sequence
|
Structure | 10 20 30 40 50
UGGACAACUCCAUUGAU--| C U UG G U A CGUGGAA
CC UGG G AG GUAUGUGCCC UGGACU CAU G
GG ACU C UC CAUAUACGGG ACCUGA GUA C
CAGAGGCACUUCUUGAUUC^ A C GU A U C CCACGAC
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Yes
|
Motifs | UGUG in loop |
Tissue expression
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Br |
Br |
He |
He |
He |
He |
Ov |
Ov |
Ov |
Ov |
Te |
Te |
Te |
Te |
To |
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Star sequence |
Loc-Mir-455-v3_5p* |
mirBase accession | None |
Sequence |
0- GUAUGUGCCCUUGGACUACAUC -22
Get sequence
|
Mature sequence |
Loc-Mir-455-v3_3p |
mirBase accession | None |
Sequence |
38- UGCAGUCCAUGGGCAUAUACAC -60
Get sequence
|