| MirGeneDB ID | Bta-Mir-455-v3 |
|---|---|
| Family name | MIR-455 (all species) |
| Seed | GCAGUCC |
| Species | Cow (Bos taurus) |
| MiRBase ID | bta-mir-455 |
| Paralogues | Bta-Mir-455-v1 Bta-Mir-455-v2 |
| Orthologues | Aca-Mir-455-v3 Ami-Mir-455-v3 Cfa-Mir-455-v3 Cja-Mir-455-v3 Cli-Mir-455-v3 Cmi-Mir-455-v3 Cpi-Mir-455-v3 Cpo-Mir-455-v3 Dno-Mir-455-v3 Ebu-Mir-455-v3 Eca-Mir-455-v3 Ete-Mir-455-v3 Gga-Mir-455-v3 Gja-Mir-455 Hsa-Mir-455-v3 Laf-Mir-455-v3 Lch-Mir-455 Loc-Mir-455-v3 Mdo-Mir-455-v3 Mml-Mir-455-v3 Mmr-Mir-455-v3 Mmu-Mir-455-v3 Mun-Mir-455 Oan-Mir-455-v3 Ocu-Mir-455-v3 Pab-Mir-455-v3 Pbv-Mir-455 Pma-Mir-455 Rno-Mir-455-v3 Sha-Mir-455-v3 Spt-Mir-455 Sto-Mir-455-v3 Tgu-Mir-455-v3 Xtr-Mir-455 |
| Node of Origin (locus) | Vertebrata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCF_002263795.1_ARS-UCD1.2_BTA) |
NC_037335.1: 103437412-103437471 [+] UCSC Ensembl |
| Clustered miRNAs (< 50kb from Mir-455-v3) |
Mir-455-v2
NC_037335.1: 103437412-103437471 [+]
UCSC
Ensembl
Mir-455-v3 NC_037335.1: 103437412-103437471 [+] UCSC Ensembl Mir-455-v1 NC_037335.1: 103437413-103437470 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | CGAGUGCCCGCGCCCUUCCCUGGCGUGAGGGUAUGUGCCUUUGGACUACAUCGUGGAAGCCAGCACCAUGCAGUCCAUGGGCAUAUACACUUGCCUCAAGGCCUAUGUCAUCGUGGAACCGet precursor sequence |
| Structure | 10 20 30 40 50 CGAGUGCCCGCGCCCUU--| C C UG G U A CGUGGAA CC UGG G AG GUAUGUGCCU UGGACU CAU G GG ACU C UC CAUAUACGGG ACCUGA GUA C CCAAGGUGCUACUGUAUCC^ A C GU A U C CCACGAC . 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Yes |
| Motifs | UGUG in loop |
| Star sequence | Bta-Mir-455-v3_5p* |
| mirBase accession | MIMAT0003835 |
| Sequence |
0- GUAUGUGCCUUUGGACUACAUC -22
Get sequence
|
| Proposed targets |
TargetScanVert: bta-miR-455-5p |
| Mature sequence | Bta-Mir-455-v3_3p |
| mirBase accession | MIMAT0003836 |
| Sequence |
38- UGCAGUCCAUGGGCAUAUACAC -60
Get sequence
|
| Proposed targets |
TargetScanVert: bta-miR-455-3p |
