Mir-455-v3

MirGeneDB ID

Bta-Mir-455-v3

Family name

MIR-455 (all species)

Seed

GCAGUCC

Species

Cow (Bos taurus)

MiRBase ID

bta-mir-455

Paralogues

Bta-Mir-455-v1 Bta-Mir-455-v2

Orthologues

Aca-Mir-455-v3 Ami-Mir-455-v3 Cfa-Mir-455-v3 Cja-Mir-455-v3 Cli-Mir-455-v3 Cmi-Mir-455-v3 Cpi-Mir-455-v3 Cpo-Mir-455-v3 Dno-Mir-455-v3 Ebu-Mir-455-v3 Eca-Mir-455-v3 Ete-Mir-455-v3 Gga-Mir-455-v3 Gja-Mir-455 Hsa-Mir-455-v3 Laf-Mir-455-v3 Lch-Mir-455 Loc-Mir-455-v3 Mdo-Mir-455-v3 Mml-Mir-455-v3 Mmr-Mir-455-v3 Mmu-Mir-455-v3 Mun-Mir-455 Oan-Mir-455-v3 Ocu-Mir-455-v3 Pab-Mir-455-v3 Pbv-Mir-455 Pma-Mir-455 Rno-Mir-455-v3 Sha-Mir-455-v3 Spt-Mir-455 Sto-Mir-455-v3 Tgu-Mir-455-v3 Xtr-Mir-455

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037335.1: 103437412-103437471 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-455-v3)

Mir-455-v2 NC_037335.1: 103437412-103437471 [+] UCSC Ensembl
Mir-455-v3 NC_037335.1: 103437412-103437471 [+] UCSC Ensembl
Mir-455-v1 NC_037335.1: 103437413-103437470 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CGAGUGCCCGCGCCCUUCCCUGGCGUGAGGGUAUGUGCCUUUGGACUACAUCGUGGAAGCCAGCACCAUGCAGUCCAUGGGCAUAUACACUUGCCUCAAGGCCUAUGUCAUCGUGGAACC

Get precursor sequence

Structure

        10          20        30        40        50         
CGAGUGCCCGCGCCCUU--| C   C UG  G          U      A   CGUGGAA 
                   CC UGG G  AG GUAUGUGCCU UGGACU CAU       G
                   GG ACU C  UC CAUAUACGGG ACCUGA GUA       C
CCAAGGUGCUACUGUAUCC^ A   C GU  A          U      C   CCACGAC 
.       110       100        90        80        70        60

Deep sequencing

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3' NTU

Yes

Motifs

UGUG in loop

Tissue expression

Ad	Bo	Br	Ce	Co	Co	De	Fe	He	Hy	Ir	Ki	La	Lo	Mi	No	Op	Or	Pe	Re	Su	Te

Star sequence

Bta-Mir-455-v3_5p*

mirBase accession

MIMAT0003835

Sequence

0- GUAUGUGCCUUUGGACUACAUC -22

Get sequence

Proposed targets

TargetScanVert: bta-miR-455-5p

Mature sequence

Bta-Mir-455-v3_3p

mirBase accession

MIMAT0003836

Sequence

38- UGCAGUCCAUGGGCAUAUACAC -60

Get sequence

Proposed targets

TargetScanVert: bta-miR-455-3p