MirGeneDB ID | Pab-Mir-455-v3 |
---|---|
Family name | MIR-455 (all species) |
Seed | GCAGUCC |
Species | Sumatran orangutan (Pongo abelii) |
MiRBase ID | |
Paralogues | Pab-Mir-455-v1 Pab-Mir-455-v2 |
Orthologues | Aca-Mir-455-v3 Ami-Mir-455-v3 Bta-Mir-455-v3 Cfa-Mir-455-v3 Cja-Mir-455-v3 Cli-Mir-455-v3 Cmi-Mir-455-v3 Cpi-Mir-455-v3 Cpo-Mir-455-v3 Dno-Mir-455-v3 Ebu-Mir-455-v3 Eca-Mir-455-v3 Ete-Mir-455-v3 Gga-Mir-455-v3 Gja-Mir-455 Hsa-Mir-455-v3 Laf-Mir-455-v3 Lch-Mir-455 Loc-Mir-455-v3 Mdo-Mir-455-v3 Mml-Mir-455-v3 Mmr-Mir-455-v3 Mmu-Mir-455-v3 Mun-Mir-455 Oan-Mir-455-v3 Ocu-Mir-455-v3 Pbv-Mir-455 Pma-Mir-455 Rno-Mir-455-v3 Sha-Mir-455-v3 Spt-Mir-455 Sto-Mir-455-v3 Tgu-Mir-455-v3 Xtr-Mir-455 |
Node of Origin (locus) | Vertebrata |
Node of Origin (family) | Vertebrata |
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054692.2: 105374283-105374342 [+] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | CGAGCGCCCGCGCCCUUCCCUGGCGUGAGGGUAUGUGCCUUUGGACUACAUCGUGGAAGCCAGCACCAUGCAGUCCAUGGGCAUAUACACUUGCCUCAAGGCCUAUGUCAUCGAGGAGCCGet precursor sequence |
Structure | 10 20 30 40 50 CGAGCGCCCGCGCCCUU--| C C UG G U A CGUGGAA CC UGG G AG GUAUGUGCCU UGGACU CAU G GG ACU C UC CAUAUACGGG ACCUGA GUA C CCGAGGAGCUACUGUAUCC^ A C GU A U C CCACGAC . 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | Yes |
Motifs | UGUG in loop |
Star sequence | Pab-Mir-455-v3_5p* |
mirBase accession | None |
Sequence |
0- GUAUGUGCCUUUGGACUACAUC -22
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|
Mature sequence | Pab-Mir-455-v3_3p |
mirBase accession | None |
Sequence |
38- UGCAGUCCAUGGGCAUAUACAC -60
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