MirGeneDB ID | Bta-Mir-455-v2 |
---|---|
Family name | MIR-455 (all species) |
Seed | CAGUCCA |
Species | Cow (Bos taurus) |
MiRBase ID | bta-mir-455 |
Paralogues | Bta-Mir-455-v1 Bta-Mir-455-v3 |
Orthologues | Aca-Mir-455-v2 Ami-Mir-455-v2 Cfa-Mir-455-v2 Cja-Mir-455-v2 Cli-Mir-455-v2 Cmi-Mir-455-v2 Cpi-Mir-455-v2 Cpo-Mir-455-v2 Dno-Mir-455-v2 Ebu-Mir-455-v2 Eca-Mir-455-v2 Ete-Mir-455-v2 Gga-Mir-455-v2 Gja-Mir-455 Hsa-Mir-455-v2 Laf-Mir-455-v2 Lch-Mir-455 Loc-Mir-455-v2 Mdo-Mir-455-v2 Mml-Mir-455-v2 Mmr-Mir-455-v2 Mmu-Mir-455-v2 Mun-Mir-455 Oan-Mir-455-v2 Ocu-Mir-455-v2 Pab-Mir-455-v2 Pbv-Mir-455 Pma-Mir-455 Rno-Mir-455-v2 Sha-Mir-455-v2 Spt-Mir-455 Sto-Mir-455-v2 Tgu-Mir-455-v2 Xtr-Mir-455 |
Node of Origin (locus) | Vertebrata |
Node of Origin (family) | Vertebrata |
Genome context (GCF_002263795.1_ARS-UCD1.2_BTA) |
NC_037335.1: 103437412-103437471 [+] UCSC Ensembl |
Clustered miRNAs (< 50kb from Mir-455-v2) |
Mir-455-v2
NC_037335.1: 103437412-103437471 [+]
UCSC
Ensembl
Mir-455-v3 NC_037335.1: 103437412-103437471 [+] UCSC Ensembl Mir-455-v1 NC_037335.1: 103437413-103437470 [+] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | CGAGUGCCCGCGCCCUUCCCUGGCGUGAGGGUAUGUGCCUUUGGACUACAUCGUGGAAGCCAGCACCAUGCAGUCCAUGGGCAUAUACACUUGCCUCAAGGCCUAUGUCAUCGUGGAACCGet precursor sequence |
Structure | 10 20 30 40 50 CGAGUGCCCGCGCCCUU--| C C UG G U A CGUGGAA CC UGG G AG GUAUGUGCCU UGGACU CAU G GG ACU C UC CAUAUACGGG ACCUGA GUA C CCAAGGUGCUACUGUAUCC^ A C GU A U C CCACGAC . 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | Yes |
Motifs | No |
Star sequence | Bta-Mir-455-v2_5p* |
mirBase accession | MIMAT0003835 |
Sequence |
0- GUAUGUGCCUUUGGACUACAU -21
Get sequence
|
Proposed targets |
TargetScanVert: bta-miR-455-5p |
Mature sequence | Bta-Mir-455-v2_3p |
mirBase accession | MIMAT0003836 |
Sequence |
39- GCAGUCCAUGGGCAUAUACAC -60
Get sequence
|
Proposed targets |
TargetScanVert: bta-miR-455-3p |