Mir-455-v2

MirGeneDB ID

Bta-Mir-455-v2

Family name

MIR-455 (all species)

Seed

CAGUCCA

Species

Cow (Bos taurus)

MiRBase ID

bta-mir-455

Paralogues

Bta-Mir-455-v1 Bta-Mir-455-v3

Orthologues

Aca-Mir-455-v2 Ami-Mir-455-v2 Cfa-Mir-455-v2 Cja-Mir-455-v2 Cli-Mir-455-v2 Cmi-Mir-455-v2 Cpi-Mir-455-v2 Cpo-Mir-455-v2 Dno-Mir-455-v2 Ebu-Mir-455-v2 Eca-Mir-455-v2 Ete-Mir-455-v2 Gga-Mir-455-v2 Gja-Mir-455 Hsa-Mir-455-v2 Laf-Mir-455-v2 Lch-Mir-455 Loc-Mir-455-v2 Mdo-Mir-455-v2 Mml-Mir-455-v2 Mmr-Mir-455-v2 Mmu-Mir-455-v2 Mun-Mir-455 Oan-Mir-455-v2 Ocu-Mir-455-v2 Pab-Mir-455-v2 Pbv-Mir-455 Pma-Mir-455 Rno-Mir-455-v2 Sha-Mir-455-v2 Spt-Mir-455 Sto-Mir-455-v2 Tgu-Mir-455-v2 Xtr-Mir-455

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037335.1: 103437412-103437471 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-455-v2)

Mir-455-v2 NC_037335.1: 103437412-103437471 [+] UCSC Ensembl
Mir-455-v3 NC_037335.1: 103437412-103437471 [+] UCSC Ensembl
Mir-455-v1 NC_037335.1: 103437413-103437470 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CGAGUGCCCGCGCCCUUCCCUGGCGUGAGGGUAUGUGCCUUUGGACUACAUCGUGGAAGCCAGCACCAUGCAGUCCAUGGGCAUAUACACUUGCCUCAAGGCCUAUGUCAUCGUGGAACC

Get precursor sequence

Structure

        10          20        30        40        50         
CGAGUGCCCGCGCCCUU--| C   C UG  G          U      A   CGUGGAA 
                   CC UGG G  AG GUAUGUGCCU UGGACU CAU       G
                   GG ACU C  UC CAUAUACGGG ACCUGA GUA       C
CCAAGGUGCUACUGUAUCC^ A   C GU  A          U      C   CCACGAC 
.       110       100        90        80        70        60

Deep sequencing

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3' NTU

Yes

Motifs

Tissue expression

Ad	Bo	Br	Ce	Co	Co	De	Fe	He	Hy	Ir	Ki	La	Lo	Mi	No	Op	Or	Pe	Re	Su	Te

Star sequence

Bta-Mir-455-v2_5p*

mirBase accession

MIMAT0003835

Sequence

0- GUAUGUGCCUUUGGACUACAU -21

Get sequence

Proposed targets

TargetScanVert: bta-miR-455-5p

Mature sequence

Bta-Mir-455-v2_3p

mirBase accession

MIMAT0003836

Sequence

39- GCAGUCCAUGGGCAUAUACAC -60

Get sequence

Proposed targets

TargetScanVert: bta-miR-455-3p