MirGeneDB ID | Sto-Mir-455-v2 |
Family name |
MIR-455 (all species) |
Seed |
CAGUCCA |
Species |
Cloudy Catshark (Scyliorhinus torazame) |
MiRBase ID |
|
Paralogues |
Sto-Mir-455-v1
Sto-Mir-455-v3
|
Orthologues |
Aca-Mir-455-v2
Ami-Mir-455-v2
Bta-Mir-455-v2
Cfa-Mir-455-v2
Cja-Mir-455-v2
Cli-Mir-455-v2
Cmi-Mir-455-v2
Cpi-Mir-455-v2
Cpo-Mir-455-v2
Dno-Mir-455-v2
Ebu-Mir-455-v2
Eca-Mir-455-v2
Ete-Mir-455-v2
Gga-Mir-455-v2
Gja-Mir-455
Hsa-Mir-455-v2
Laf-Mir-455-v2
Lch-Mir-455
Loc-Mir-455-v2
Mdo-Mir-455-v2
Mml-Mir-455-v2
Mmr-Mir-455-v2
Mmu-Mir-455-v2
Mun-Mir-455
Oan-Mir-455-v2
Ocu-Mir-455-v2
Pab-Mir-455-v2
Pbv-Mir-455
Pma-Mir-455
Rno-Mir-455-v2
Sha-Mir-455-v2
Spt-Mir-455
Tgu-Mir-455-v2
Xtr-Mir-455
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_003427355_STO_add) |
BFAA01000216.1: 682946-683005 [+]
|
Precursor (pre-Mir +30nt flank) |
GGCCGACGCAGCUCGAUCCCUGGUGUGAGGGUAUGUGCCCUUGGACUACAUCGUGGAAGCCAGCACCAUGCAGUCCAUGGGCAUAUACACUUGCCUCAAGGCUUUGUUCAUCACUUGCAC
Get precursor sequence
|
Structure | 10 20 30 40 50
GGCCGACGCAGCUCGAU--| C U UG G U A CGUGGAA
CC UGG G AG GUAUGUGCCC UGGACU CAU G
GG ACU C UC CAUAUACGGG ACCUGA GUA C
CACGUUCACUACUUGUUUC^ A C GU A U C CCACGAC
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Yes
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Sto-Mir-455-v2_5p* |
mirBase accession | None |
Sequence |
0- GUAUGUGCCCUUGGACUACAU -21
Get sequence
|
Mature sequence |
Sto-Mir-455-v2_3p |
mirBase accession | None |
Sequence |
39- GCAGUCCAUGGGCAUAUACAC -60
Get sequence
|