MirGeneDB ID | Sto-Mir-455-v1 |
Family name |
MIR-455 (all species) |
Seed |
AUGUGCC |
Species |
Cloudy Catshark (Scyliorhinus torazame) |
MiRBase ID |
|
Paralogues |
Sto-Mir-455-v2
Sto-Mir-455-v3
|
Orthologues |
Aca-Mir-455-v1
Ami-Mir-455-v1
Bta-Mir-455-v1
Cfa-Mir-455-v1
Cja-Mir-455-v1
Cli-Mir-455-v1
Cmi-Mir-455-v1
Cpi-Mir-455-v1
Cpo-Mir-455-v1
Dno-Mir-455-v1
Ebu-Mir-455-v1
Eca-Mir-455-v1
Ete-Mir-455-v1
Gga-Mir-455-v1
Gja-Mir-455
Hsa-Mir-455-v1
Laf-Mir-455-v1
Lch-Mir-455
Loc-Mir-455-v1
Mdo-Mir-455-v1
Mml-Mir-455-v1
Mmr-Mir-455-v1
Mmu-Mir-455-v1
Mun-Mir-455
Oan-Mir-455-v1
Ocu-Mir-455-v1
Pab-Mir-455-v1
Pbv-Mir-455
Pma-Mir-455
Rno-Mir-455-v1
Sha-Mir-455-v1
Spt-Mir-455
Tgu-Mir-455-v1
Xtr-Mir-455
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_003427355_STO_add) |
BFAA01000216.1: 682947-683004 [+]
|
Precursor (pre-Mir +30nt flank) |
GCCGACGCAGCUCGAUCCCUGGUGUGAGGGUAUGUGCCCUUGGACUACAUCGUGGAAGCCAGCACCAUGCAGUCCAUGGGCAUAUACACUUGCCUCAAGGCUUUGUUCAUCACUUGCA
Get precursor sequence
|
Structure | 10 20 30 40 50
GCCGACGCAGCUCGAUC- -| U UG G U A C UGGAA
CC UGG G AG GUAUGUGCCC UGGACU CAU G G
GG ACU C UC CAUAUACGGG ACCUGA GUA C C
ACGUUCACUACUUGUUUC A^ C GU A U C C ACGAC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Dicer cut +1 on both arms. |
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Sto-Mir-455-v1_5p |
mirBase accession | None |
Sequence |
0- UAUGUGCCCUUGGACUACAUCG -22
Get sequence
|
Star sequence |
Sto-Mir-455-v1_3p* |
mirBase accession | None |
Sequence |
36- AUGCAGUCCAUGGGCAUAUACA -58
Get sequence
|