Mir-455-v1

MirGeneDB ID

Ami-Mir-455-v1

Family name

MIR-455 (all species)

Seed

AUGUGCC

Species

American alligator (Alligator mississippiensis)

MiRBase ID

ami-mir-455

Paralogues

Ami-Mir-455-v2 Ami-Mir-455-v3

Orthologues

Aca-Mir-455-v1 Bta-Mir-455-v1 Cfa-Mir-455-v1 Cja-Mir-455-v1 Cli-Mir-455-v1 Cmi-Mir-455-v1 Cpi-Mir-455-v1 Cpo-Mir-455-v1 Dno-Mir-455-v1 Ebu-Mir-455-v1 Eca-Mir-455-v1 Ete-Mir-455-v1 Gga-Mir-455-v1 Gja-Mir-455 Hsa-Mir-455-v1 Laf-Mir-455-v1 Lch-Mir-455 Loc-Mir-455-v1 Mdo-Mir-455-v1 Mml-Mir-455-v1 Mmr-Mir-455-v1 Mmu-Mir-455-v1 Mun-Mir-455 Oan-Mir-455-v1 Ocu-Mir-455-v1 Pab-Mir-455-v1 Pbv-Mir-455 Pma-Mir-455 Rno-Mir-455-v1 Sha-Mir-455-v1 Spt-Mir-455 Sto-Mir-455-v1 Tgu-Mir-455-v1 Xtr-Mir-455

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)

NW_017713629.1: 12996643-12996700 [+] UCSC

Clustered miRNAs
(< 50kb from Mir-455-v1)

Mir-455-v2 NW_017713629.1: 12996642-12996701 [+] UCSC
Mir-455-v3 NW_017713629.1: 12996642-12996701 [+] UCSC
Mir-455-v1 NW_017713629.1: 12996643-12996700 [+] UCSC

Precursor
(pre-Mir +30nt flank)

GCGGAGUUCUCAUGAUCCCUGGUGUGAGGGUAUGUGCCCUUGGACUACAUCGUGGAAGCCAGCACCAUGCAGUCCAUGGGCAUAUACACUUGCCUCAAGGUUUAUUUCAUCACGACUG

Get precursor sequence

Structure

        10          20        30        40        50        
GCGGAGUUCUCAUGAUC-  -|  U UG  G          U      A   C UGGAA 
                  CC UGG G  AG GUAUGUGCCC UGGACU CAU G     G
                  GG ACU C  UC CAUAUACGGG ACCUGA GUA C     C
GUCAGCACUACUUUAUUU  A^  C GU  A          U      C   C ACGAC 
      110       100        90        80        70        60