MirGeneDB 2.1
MirGeneDB ID

Cgi-Mir-1175

Family name MIR-1175 (all species)
Seed GAGAUUC
Species Pacific oyster (Crassostrea gigas)
MiRBase ID
Paralogues
Orthologues Aae-Mir-1175  Asu-Mir-1175  Bge-Mir-1175  Bpl-Mir-1175  Cte-Mir-1175  Dan-Mir-1175  Dma-Mir-1175  Dme-Mir-1175  Dmo-Mir-1175  Dpu-Mir-1175  Dsi-Mir-1175  Dya-Mir-1175-P3  Dya-Mir-1175-P4  Efe-Mir-1175-P1  Efe-Mir-1175-P2  Hme-Mir-1175  Isc-Mir-1175  Lan-Mir-1175  Lgi-Mir-1175  Lpo-Mir-1175-P5  Lpo-Mir-1175-P6  Lpo-Mir-1175-P7  Npo-Mir-1175  Obi-Mir-1175  Ovu-Mir-1175  Sme-Mir-1175-P8  Sme-Mir-1175-P9  Tca-Mir-1175 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(CGI_GCA_000297895.1)		 scaffold514: 99890-99948 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AAUGUAUGGAAGAGGAAGGGGUGUAUUUGGAGUGGAGAGAGUUUUAUCUCAUCGUAAAUUGCCGGGUGAGAUUCAACUCCUCCAACUGCACACUACGCCAACUUGCAGCACAUGGACUU
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Structure
        10         20         30         40        50         
AAUGUAUGGAAGAGGAAGG-      UU-  G  -|    A     UU        GUAAA 
                    GGUGUA   UG AG UGGAG GAGUU  AUCUCAUC     \
                    CCGCAU   AC UC ACCUC CUCAA  UAGAGUGG     U
UUCAGGUACACGACGUUCAA      CAC  G  A^    -     CU        GCCGU 
       110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
A- D- D- Eg F- Gi He Ju L- Ma Ma Pe Re Sp Um Ea Fe Ha La Ma
Star sequence

Cgi-Mir-1175_5p*
mirBase accessionNone
Sequence 
0- AGUGGAGAGAGUUUUAUCUCAUC -23
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Mature sequence

Cgi-Mir-1175_3p
mirBase accessionNone
Sequence 
36- UGAGAUUCAACUCCUCCAACUGC -59
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