MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-378

Family name MIR-378 (all species)
Seed CUGGACU
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues
Orthologues Bta-Mir-378  Cfa-Mir-378  Cpo-Mir-378  Dno-Mir-378  Eca-Mir-378  Ete-Mir-378  Hsa-Mir-378  Laf-Mir-378  Mml-Mir-378  Mmr-Mir-378-P1  Mmr-Mir-378-P2  Mmr-Mir-378-P3  Mmu-Mir-378  Ocu-Mir-378  Pab-Mir-378  Rno-Mir-378 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021916.1: 46506783-46506842 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCAGCCAGAGGGUGACAGAGCCACCCAGGGCUCCUGACUCCAGGUCCUGUGUGUUACCUCGAAAUAGCACUGGACUUGGAGUCAGAAGGCCUGAGUGGAGUCACCUUCCCCACUCUCUGG
Get precursor sequence
Structure
        10         20         30        40        50         
GCAGCCAGAGGGUGACA-  G-|   C    G  C              U    GUUACC 
                  GA  CCAC CAGG CU CUGACUCCAGGUCC GUGU      U
                  CU  GGUG GUCC GA GACUGAGGUUCAGG CACG      C
GGUCUCUCACCCCUUCCA  GA^   A    G  A              U    AUAAAG 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Cja-Mir-378_5p*
mirBase accessionNone
Sequence 
0- CUCCUGACUCCAGGUCCUGUGU -22
Get sequence
Mature sequence

Cja-Mir-378_3p
mirBase accessionNone
Sequence 
38- ACUGGACUUGGAGUCAGAAGGC -60
Get sequence