Mir-378

MirGeneDB ID

Eca-Mir-378

Family name

MIR-378 (all species)

Seed

CUGGACU

Species

Horse (Equus caballus)

MiRBase ID

Paralogues

Orthologues

Bta-Mir-378 Cfa-Mir-378 Cja-Mir-378 Cpo-Mir-378 Dno-Mir-378 Ete-Mir-378 Hsa-Mir-378 Laf-Mir-378 Mml-Mir-378 Mmr-Mir-378-P1 Mmr-Mir-378-P2 Mmr-Mir-378-P3 Mmu-Mir-378 Ocu-Mir-378 Pab-Mir-378 Rno-Mir-378

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_002863925.1_EquCab3.0)

CM009161.1: 27496583-27496642 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCAGCCAGUGAGUGACAGAGCCACCCAGGGCUCCUGACUCCAGGUCCUGUGUGUUACCUCGAAAUAGCACUGGACUUGGAGUCAGAAGGCCUGAGUGGAGUCGCCUUCCCCACUCUCUGG

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Structure

        10         20         30        40        50         
GCAGCCAGUGAGUGACA-  G-|   C    G  C              U    GUUACC 
                  GA  CCAC CAGG CU CUGACUCCAGGUCC GUGU      U
                  CU  GGUG GUCC GA GACUGAGGUUCAGG CACG      C
GGUCUCUCACCCCUUCCG  GA^   A    G  A              U    AUAAAG 
.       110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er

Star sequence

Eca-Mir-378_5p*

mirBase accession

None

Sequence

0- CUCCUGACUCCAGGUCCUGUGU -22

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Mature sequence

Eca-Mir-378_3p

mirBase accession

None

Sequence

38- ACUGGACUUGGAGUCAGAAGGC -60

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