| MirGeneDB ID | Pab-Mir-378 |
|---|---|
| Family name | MIR-378 (all species) |
| Seed | CUGGACU |
| Species | Sumatran orangutan (Pongo abelii) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Bta-Mir-378 Cfa-Mir-378 Cja-Mir-378 Cpo-Mir-378 Dno-Mir-378 Eca-Mir-378 Ete-Mir-378 Hsa-Mir-378 Laf-Mir-378 Mml-Mir-378 Mmr-Mir-378-P1 Mmr-Mir-378-P2 Mmr-Mir-378-P3 Mmu-Mir-378 Ocu-Mir-378 Rno-Mir-378 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054683.2: 158363392-158363451 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | GCAGCCAGAGGGUGACAGAGCCACCCAGGGCUCCUGACUCCAGGUCCUGUGUGUUAACUAGAAAUAGCACUGGACUUGGAGUCAGAAGGCCUGAGUGGAGUCACCUUCCCCACUCUCUGGGet precursor sequence |
| Structure | 10 20 30 40 50 GCAGCCAGAGGGUGACA- G-| C G C U GUUAAC GA CCAC CAGG CU CUGACUCCAGGUCC GUGU U CU GGUG GUCC GA GACUGAGGUUCAGG CACG A GGUCUCUCACCCCUUCCA GA^ A G A U AUAAAG . 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Pab-Mir-378_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- CUCCUGACUCCAGGUCCUGUGU -22
Get sequence
|
| Mature sequence | Pab-Mir-378_3p |
| mirBase accession | None |
| Sequence |
38- ACUGGACUUGGAGUCAGAAGGC -60
Get sequence
|
