MirGeneDB ID | Ete-Mir-378 |
Family name |
MIR-378 (all species) |
Seed |
CUGGACU |
Species |
Lesser hedgehog tenrec (Echinops telfairi) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Bta-Mir-378
Cfa-Mir-378
Cja-Mir-378
Cpo-Mir-378
Dno-Mir-378
Eca-Mir-378
Hsa-Mir-378
Laf-Mir-378
Mml-Mir-378
Mmr-Mir-378-P1
Mmr-Mir-378-P2
Mmr-Mir-378-P3
Mmu-Mir-378
Ocu-Mir-378
Pab-Mir-378
Rno-Mir-378
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (echTel2) |
JH980294: 39413974-39414033 [+]
UCSC
|
Precursor (pre-Mir +30nt flank) |
GCAGCCAGCGGGUGACAGAGCCACCCAGGGCUCCUGACUCCAGGUCCUGUGUGUUACCUCGAAAUAGCACUGGACUUGGAGUCAGAAGGCCUGAGUGGAGUCGCCUUCCCCACUCUCCGG
Get precursor sequence
|
Structure | 10 20 30 40 50
GCAGCCAGCGGGUGACA- G-| C G C U GUUACC
GA CCAC CAGG CU CUGACUCCAGGUCC GUGU U
CU GGUG GUCC GA GACUGAGGUUCAGG CACG C
GGCCUCUCACCCCUUCCG GA^ A G A U AUAAAG
. 110 100 90 80 70 60 |
Deep sequencing |
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|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Ete-Mir-378_5p* |
mirBase accession | None |
Sequence |
0- CUCCUGACUCCAGGUCCUGUGU -22
Get sequence
|
Mature sequence |
Ete-Mir-378_3p |
mirBase accession | None |
Sequence |
38- ACUGGACUUGGAGUCAGAAGGC -60
Get sequence
|