MirGeneDB ID | Laf-Mir-378 |
---|---|
Family name | MIR-378 (all species) |
Seed | UCCUGAC |
Species | African bush elephant (Loxodonta africana) |
MiRBase ID | |
Paralogues | |
Orthologues | Bta-Mir-378 Cfa-Mir-378 Cja-Mir-378 Cpo-Mir-378 Dno-Mir-378 Eca-Mir-378 Ete-Mir-378 Hsa-Mir-378 Mml-Mir-378 Mmr-Mir-378-P1 Mmr-Mir-378-P2 Mmr-Mir-378-P3 Mmu-Mir-378 Ocu-Mir-378 Pab-Mir-378 Rno-Mir-378 |
Node of Origin (locus) | Eutheria |
Node of Origin (family) | Eutheria |
Genome context (GCA_000001905.1_Loxafr3.0) |
GL010028.1: 69203777-69203836 [+] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | GCAGCCAGCGGGUGACAGAGCCACCCAGGGCUCCUGACUCCAGGUCCUGUGUGUUACCUCCAAAUAGCACUGGACUUGGAGUCAGAAGGCCUGAGUGGAGUCGCCUUCCCCACUCUCUGGGet precursor sequence |
Structure | 10 20 30 40 50 GCAGCCAGCGGGUGACA- G-| C G C U GUUACC GA CCAC CAGG CU CUGACUCCAGGUCC GUGU U CU GGUG GUCC GA GACUGAGGUUCAGG CACG C GGUCUCUCACCCCUUCCG GA^ A G A U AUAAAC . 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | No |
Motifs | CNNC at 3p(+17) |
Mature sequence | Laf-Mir-378_5p |
mirBase accession | None |
Sequence |
0- CUCCUGACUCCAGGUCCUGUGU -22
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|
Co-mature sequence | Laf-Mir-378_3p |
mirBase accession | None |
Sequence |
38- ACUGGACUUGGAGUCAGAAGGC -60
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|