MirGeneDB ID | Cpo-Mir-223 |
Family name |
MIR-223 (all species) |
Seed |
GUCAGUU |
Species |
Guinea pig (Cavia porcellus) |
MiRBase ID |
cpo-mir-223
|
Paralogues |
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Orthologues |
Aca-Mir-223
Ami-Mir-223
Bta-Mir-223
Cfa-Mir-223
Cja-Mir-223
Cli-Mir-223
Cmi-Mir-223
Cpi-Mir-223
Dno-Mir-223
Dre-Mir-223
Ebu-Mir-223
Eca-Mir-223
Ete-Mir-223
Gga-Mir-223
Gja-Mir-223
Gmo-Mir-223
Hsa-Mir-223-v1
Hsa-Mir-223-v2
Laf-Mir-223
Lch-Mir-223
Loc-Mir-223
Mal-Mir-223
Mdo-Mir-223
Mml-Mir-223
Mmr-Mir-223
Mmu-Mir-223
Mun-Mir-223
Neu-Mir-223
Oan-Mir-223
Ocu-Mir-223
Pab-Mir-223
Pbv-Mir-223
Pma-Mir-223
Rno-Mir-223
Sha-Mir-223
Spt-Mir-223
Sto-Mir-223
Tgu-Mir-223
Tni-Mir-223
Xla-Mir-223
Xtr-Mir-223
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
|
Genome context (cavPor3) |
scaffold_122: 2726066-2726130 [+]
UCSC
|
Precursor (pre-Mir +30nt flank) |
CUUGACCUGAUGUCUUGCAGUACCACACUCCGUGUAUUUGACAAGCUGAGUUGGACACUCCAUGUGGUAGAGUGUCAGUUUGUCAAAUACCCCAAGUGCGGCACAUGCCUAGCAGCUCCAAACUG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CUUGACCUGAUGUCUUGCA--| A A CCGU GUUGGACACUCC
GU CC CACU GUAUUUGACAAGCUGA \
CA GG GUGA CAUAAACUGUUUGACU A
GUCAAACCUCGACGAUCCGUA^ C C ACCC GUGAGAUGGUGU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Bl |
Bl |
Bl |
Bl |
Oo |
Oo |
Oo |
Oo |
To |
Wh |
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Star sequence |
Cpo-Mir-223_5p* |
mirBase accession | MIMAT0047134 |
Sequence |
0- CGUGUAUUUGACAAGCUGAGUUGGAC -26
Get sequence
|
Mature sequence |
Cpo-Mir-223_3p |
mirBase accession | MIMAT0047135 |
Sequence |
42- UGUCAGUUUGUCAAAUACCCCAA -65
Get sequence
|