Mir-223

MirGeneDB ID

Tni-Mir-223

Family name

MIR-223 (all species)

Seed

GUCAGUU

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

tni-mir-223

Paralogues

Orthologues

Aca-Mir-223 Ami-Mir-223 Bta-Mir-223 Cfa-Mir-223 Cja-Mir-223 Cli-Mir-223 Cmi-Mir-223 Cpi-Mir-223 Cpo-Mir-223 Dno-Mir-223 Dre-Mir-223 Ebu-Mir-223 Eca-Mir-223 Ete-Mir-223 Gga-Mir-223 Gja-Mir-223 Gmo-Mir-223 Hsa-Mir-223-v1 Hsa-Mir-223-v2 Laf-Mir-223 Lch-Mir-223 Loc-Mir-223 Mal-Mir-223 Mdo-Mir-223 Mml-Mir-223 Mmr-Mir-223 Mmu-Mir-223 Mun-Mir-223 Neu-Mir-223 Oan-Mir-223 Ocu-Mir-223 Pab-Mir-223 Pbv-Mir-223 Pma-Mir-223 Rno-Mir-223 Sha-Mir-223 Spt-Mir-223 Sto-Mir-223 Tgu-Mir-223 Xla-Mir-223 Xtr-Mir-223

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

Un_random: 92603290-92603354 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGCCCCGUUUGCCGAUCAGGCCCUUCACUUAGUGUAUUUGACAAGCUGUGUUUGACACUCUGUAUCUGCGAGUGUCAGUUUGUCAAAUACCCCAAGUGAGGUGUCACUUGUCUGCAGCCGAACUC

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Structure

        10          20        30        40         50        60 
AGCCCCGUUUGCCGAUCA--   C        AGU               -|GU  GACACUC 
                    GGC CUUCACUU   GUAUUUGACAAGCUG U  UU       U
                    CUG GGAGUGAA   CAUAAACUGUUUGAC G  AG       G
CUCAAGCCGACGUCUGUUCA   U        CCC               U^UG  CGUCUAU 
   120       110       100        90        80        70

Deep sequencing

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Comment

There is a second Dicer cut +4/+5 on the 5p arm.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Sp	Sp	Sp	To

Star sequence

Tni-Mir-223_5p*

mirBase accession

None

Sequence

0- AGUGUAUUUGACAAGCUGUGUUU -23

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Mature sequence

Tni-Mir-223_3p

mirBase accession

MIMAT0002895

Sequence

42- UGUCAGUUUGUCAAAUACCCCAA -65

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