MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-223

Family name MIR-223 (all species)
Seed CAGUUUG
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-223  Ami-Mir-223  Bta-Mir-223  Cfa-Mir-223  Cja-Mir-223  Cli-Mir-223  Cmi-Mir-223  Cpi-Mir-223  Cpo-Mir-223  Dno-Mir-223  Dre-Mir-223  Ebu-Mir-223  Eca-Mir-223  Ete-Mir-223  Gga-Mir-223  Gja-Mir-223  Gmo-Mir-223  Hsa-Mir-223-v1  Hsa-Mir-223-v2  Laf-Mir-223  Lch-Mir-223  Loc-Mir-223  Mal-Mir-223  Mdo-Mir-223  Mml-Mir-223  Mmr-Mir-223  Mmu-Mir-223  Mun-Mir-223  Neu-Mir-223  Oan-Mir-223  Ocu-Mir-223  Pab-Mir-223  Pbv-Mir-223  Rno-Mir-223  Sha-Mir-223  Spt-Mir-223  Sto-Mir-223  Tgu-Mir-223  Tni-Mir-223  Xla-Mir-223  Xtr-Mir-223 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046134.1: 469696-469757 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCACAGAGGUGGCGGUGGAGGGUCCCCACCGCGUGUAUUUGGCAAGCUAACAAGCCACCGUGCUCCUUUGUCAGUUUGUCAAAUACACCGGGUGGUGAUGCCUCCACAUCAUCAGGAGCAGC
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Structure
        10         20         30        40        50        60
CCACAGAGGUGGCGGUG-    -|  C     GC                A   AGCCACC 
                  GAGG GUC CCACC  GUGUAUUUGGCAAGCU ACA       G
                  CUCC UAG GGUGG  CACAUAAACUGUUUGA UGU       U
CGACGAGGACUACUACAC    G^  U     GC                C   UUCCUCG 
120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Gi Gu He Ki La Li Mo Mu Sk
Star sequence

Pma-Mir-223_5p*
mirBase accessionNone
Sequence 
0- GCGUGUAUUUGGCAAGCUAACA -22
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Mature sequence

Pma-Mir-223_3p
mirBase accessionNone
Sequence 
40- UCAGUUUGUCAAAUACACCGGG -62
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