MirGeneDB 2.1
MirGeneDB ID

Sto-Mir-223

Family name MIR-223 (all species)
Seed GUCAGUU
Species Cloudy Catshark (Scyliorhinus torazame)
MiRBase ID
Paralogues
Orthologues Aca-Mir-223  Ami-Mir-223  Bta-Mir-223  Cfa-Mir-223  Cli-Mir-223  Cmi-Mir-223  Cpi-Mir-223  Cpo-Mir-223  Dno-Mir-223  Dre-Mir-223  Ebu-Mir-223  Ete-Mir-223  Gga-Mir-223  Gja-Mir-223  Gmo-Mir-223  Hsa-Mir-223  Lch-Mir-223  Loc-Mir-223  Mal-Mir-223  Mdo-Mir-223  Mml-Mir-223  Mmu-Mir-223  Mun-Mir-223  Oan-Mir-223  Ocu-Mir-223  Pbv-Mir-223  Pma-Mir-223  Rno-Mir-223  Sha-Mir-223  Spt-Mir-223  Tgu-Mir-223  Tni-Mir-223  Xla-Mir-223  Xtr-Mir-223 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCA_003427355_STO_add)		 BFAA01013685.1: 26929-26994 [-]
Precursor
(pre-Mir +30nt flank)
AUGACUCAACCGAUCACAGCUUCUACACUGAGUGUAUUUGACAAGCUGAAUUCAGACACUCAAUUCAAAACAGUGUCAGUUUGUCAAAUACCCCAAGUGCAGAGCUGAAAAGCAUCUAGAAAAGCA
Get precursor sequence
Structure
        10           20        30        40        50        60  
AUGACUCAACCGAUCAC---|   U  A    GAGU                AUUCAGACACUC 
                    AGCU CU CACU    GUAUUUGACAAGCUGA            A
                    UCGA GA GUGA    CAUAAACUGUUUGACU            A
ACGAAAAGAUCUACGAAAAG^   -  C    ACCC                GUGACAAAACUU 
    120       110        100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Sto-Mir-223_5p*
mirBase accessionNone
Sequence 
0- AGUGUAUUUGACAAGCUGAAUUCA -24
Get sequence
Mature sequence

Sto-Mir-223_3p
mirBase accessionNone
Sequence 
43- UGUCAGUUUGUCAAAUACCCCAA -66
Get sequence