MirGeneDB 2.1

MirGeneDB ID

Lch-Mir-223

Family name MIR-223 (all species)
Seed GUCAGUU
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues
Orthologues Aca-Mir-223  Ami-Mir-223  Bta-Mir-223  Cfa-Mir-223  Cli-Mir-223  Cmi-Mir-223  Cpi-Mir-223  Cpo-Mir-223  Dno-Mir-223  Dre-Mir-223  Ebu-Mir-223  Ete-Mir-223  Gga-Mir-223  Gja-Mir-223  Gmo-Mir-223  Hsa-Mir-223  Loc-Mir-223  Mal-Mir-223  Mdo-Mir-223  Mml-Mir-223  Mmu-Mir-223  Mun-Mir-223  Oan-Mir-223  Ocu-Mir-223  Pbv-Mir-223  Pma-Mir-223  Rno-Mir-223  Sha-Mir-223  Spt-Mir-223  Sto-Mir-223  Tgu-Mir-223  Tni-Mir-223  Xla-Mir-223  Xtr-Mir-223 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(LatCha1_add)
JH126995.1: 1384493-1384557 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CCUGCUGCUCCGAUCCCCAGCACAGCGCUCAGUGUAUUUGACAAGCUGAAUUCGACACUCAGUUCUGUAGAGUGUCAGUUUGUCAAAUACCCCAAGUGAGGUGUUGGUAAGCAACCAGACCUUCC
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Structure
        10          20        30        40         50        60 
CCUGCUGCUCCGAUCCC--      AG    CAGU                -|   GACACUC 
                   CAGCAC  CGCU    GUAUUUGACAAGCUGA AUUC       A
                   GUUGUG  GUGA    CAUAAACUGUUUGACU UGAG       G
CCUUCCAGACCAACGAAUG      GA    ACCC                G^   AUGUCUU 
   120       110       100        90        80        70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Star sequence

Lch-Mir-223_5p* (predicted)

mirBase accessionNone
Sequence
0- AGUGUAUUUGACAAGCUGAAUUC -23
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Mature sequence

Lch-Mir-223_3p (predicted)

mirBase accessionNone
Sequence
42- UGUCAGUUUGUCAAAUACCCCAA -65
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