MirGeneDB 3.0
MirGeneDB ID

Gja-Mir-223

Family name MIR-223 (all species)
Seed GUCAGUU
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-223  Ami-Mir-223  Bta-Mir-223  Cfa-Mir-223  Cja-Mir-223  Cli-Mir-223  Cmi-Mir-223  Cpi-Mir-223  Cpo-Mir-223  Dno-Mir-223  Dre-Mir-223  Ebu-Mir-223  Eca-Mir-223  Ete-Mir-223  Gga-Mir-223  Gmo-Mir-223  Hsa-Mir-223-v1  Hsa-Mir-223-v2  Laf-Mir-223  Lch-Mir-223  Loc-Mir-223  Mal-Mir-223  Mdo-Mir-223  Mml-Mir-223  Mmr-Mir-223  Mmu-Mir-223  Mun-Mir-223  Neu-Mir-223  Oan-Mir-223  Ocu-Mir-223  Pab-Mir-223  Pbv-Mir-223  Pma-Mir-223  Rno-Mir-223  Sha-Mir-223  Spt-Mir-223  Sto-Mir-223  Tgu-Mir-223  Tni-Mir-223  Xla-Mir-223  Xtr-Mir-223 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015173717.1: 75780-75842 [+]
Precursor
(pre-Mir +30nt flank)
CGUGCCACAGAGUCCUGCAGUGCUGCUCUCCGUGUAUUUGACGAGCUGAGUUCGACACUCAGUGUGGCAGUGUCAGUUUGUCAAAUAUACAAAGUGCGGCAUUUGCCCUGCAACACCGAGCAG
Get precursor sequence
Structure
        10          20        30        40        50        60 
CGUGCCACAGAGUCCUGC--|       U  CC                  GUUCGACACUC 
                    AGUGCUGC CU  GUGUAUUUGACGAGCUGA           \
                    UUACGGCG GA  CAUAUAAACUGUUUGACU           A
GACGAGCCACAACGUCCCGU^       U  AA                  GUGACGGUGUG 
 120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Gja-Mir-223_5p*
mirBase accessionNone
Sequence 
0- CGUGUAUUUGACGAGCUGAGUUC -23
Get sequence
Mature sequence

Gja-Mir-223_3p
mirBase accessionNone
Sequence 
40- UGUCAGUUUGUCAAAUAUACAAA -63
Get sequence