MirGeneDB 3.0
MirGeneDB ID

Gmo-Mir-223

Family name MIR-223 (all species)
Seed GUCAGUU
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-223a
Paralogues
Orthologues Aca-Mir-223  Ami-Mir-223  Bta-Mir-223  Cfa-Mir-223  Cja-Mir-223  Cli-Mir-223  Cmi-Mir-223  Cpi-Mir-223  Cpo-Mir-223  Dno-Mir-223  Dre-Mir-223  Ebu-Mir-223  Eca-Mir-223  Ete-Mir-223  Gga-Mir-223  Gja-Mir-223  Hsa-Mir-223-v1  Hsa-Mir-223-v2  Laf-Mir-223  Lch-Mir-223  Loc-Mir-223  Mal-Mir-223  Mdo-Mir-223  Mml-Mir-223  Mmr-Mir-223  Mmu-Mir-223  Mun-Mir-223  Neu-Mir-223  Oan-Mir-223  Ocu-Mir-223  Pab-Mir-223  Pbv-Mir-223  Pma-Mir-223  Rno-Mir-223  Sha-Mir-223  Spt-Mir-223  Sto-Mir-223  Tgu-Mir-223  Tni-Mir-223  Xla-Mir-223  Xtr-Mir-223 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 contig60406: 328-390 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCACCUCCUUCAGGAGGCGGCGUCCCACUUAGUGUAUUUGACAAGCUGAGCUGGACACUAAAAGACAGAGUGUCAGUUUGUCAAAUACCCCAAGUGAGACGUCACUAGUCUUCAGUCCCGGUG
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Structure
        10          20        30        40         50        60
CCACCUCCUUCAGGAGGC--      C     AGU                -|  GGACACU 
                    GGCGUC CACUU   GUAUUUGACAAGCUGA GCU       A
                    CUGCAG GUGAA   CAUAAACUGUUUGACU UGA       A
GUGGCCCUGACUUCUGAUCA      A     CCC                G^  GACAGAA 
 120       110       100        90        80        70
Deep sequencing
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CommentThere is a second Dicer cut +4/+5 on the 5p arm.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Gi He In Li Sk Sp Wh
Star sequence

Gmo-Mir-223_5p*
mirBase accessionMIMAT0046040
Sequence 
0- AGUGUAUUUGACAAGCUGAGCU -22
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Mature sequence

Gmo-Mir-223_3p
mirBase accessionMIMAT0046041
Sequence 
40- UGUCAGUUUGUCAAAUACCCCAA -63
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