Mir-223

MirGeneDB ID

Mml-Mir-223

Family name

MIR-223 (all species)

Seed

GUCAGUU

Species

Rhesus monkey (Macaca mulatta)

MiRBase ID

mml-mir-223

Paralogues

Orthologues

Aca-Mir-223 Ami-Mir-223 Bta-Mir-223 Cfa-Mir-223 Cja-Mir-223 Cli-Mir-223 Cmi-Mir-223 Cpi-Mir-223 Cpo-Mir-223 Dno-Mir-223 Dre-Mir-223 Ebu-Mir-223 Eca-Mir-223 Ete-Mir-223 Gga-Mir-223 Gja-Mir-223 Gmo-Mir-223 Hsa-Mir-223-v1 Hsa-Mir-223-v2 Laf-Mir-223 Lch-Mir-223 Loc-Mir-223 Mal-Mir-223 Mdo-Mir-223 Mmr-Mir-223 Mmu-Mir-223 Mun-Mir-223 Neu-Mir-223 Oan-Mir-223 Ocu-Mir-223 Pab-Mir-223 Pbv-Mir-223 Pma-Mir-223 Rno-Mir-223 Sha-Mir-223 Spt-Mir-223 Sto-Mir-223 Tgu-Mir-223 Tni-Mir-223 Xla-Mir-223 Xtr-Mir-223

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(GCA_003339765.3_Mmul_10_traces)

CM014356.1: 62621337-62621401 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCUGGCCCGGCCUCCUGCAGUGCCACGCUCCGUGUAUUUGACAAGCUGAGUUGGACACUCCGUGUGGUAGAGUGUCAGUUUGUCAAAUACCCCAAGUGCGGCAUAUGCUUACCAGCUCCAGGCCA

Get precursor sequence

Structure

        10          20        30        40        50        60  
CCUGGCCCGGCCUCCUGCA--|    A    CCGU                GUUGGACACUCC 
                     GUGCC CGCU    GUAUUUGACAAGCUGA            \
                     UACGG GUGA    CAUAAACUGUUUGACU            G
ACCGGACCUCGACCAUUCGUA^    C    ACCC                GUGAGAUGGUGU 
   120       110       100        90        80        70

Deep sequencing

Go to detailed chart

Comment

The Dicer cuts on the 5p arm are highly variable.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Bo	Br	Br	Br	He	Ki	Li	Lu	Ly	Sk	Sp	Te	Th

Star sequence

Mml-Mir-223_5p*

mirBase accession

None

Sequence

0- CGUGUAUUUGACAAGCUGAGUUG -23

Get sequence

Mature sequence

Mml-Mir-223_3p

mirBase accession

MIMAT0002588

Sequence

42- UGUCAGUUUGUCAAAUACCCCAA -65

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Proposed targets

TargetScanVert: mml-miR-223