MirGeneDB ID | Ete-Mir-383-v1 |
Family name |
MIR-383 (all species) |
Seed |
GAUCAGA |
Species |
Lesser hedgehog tenrec (Echinops telfairi) |
MiRBase ID |
|
Paralogues |
Ete-Mir-383-v2
|
Orthologues |
Aca-Mir-383-v1
Ami-Mir-383-v1
Bta-Mir-383-v1
Cfa-Mir-383-v1
Cja-Mir-383-v1
Cli-Mir-383-v1
Cpi-Mir-383-v1
Cpo-Mir-383-v1
Dno-Mir-383-v1
Eca-Mir-383-v1
Gga-Mir-383-v1
Gja-Mir-383-v1
Hsa-Mir-383-v1
Laf-Mir-383-v1
Mdo-Mir-383-v1
Mml-Mir-383-v1
Mmr-Mir-383-v1
Mmu-Mir-383-v1
Mun-Mir-383
Oan-Mir-383-v1
Ocu-Mir-383-v1
Pab-Mir-383-v1
Pbv-Mir-383-v1
Rno-Mir-383-v1
Sha-Mir-383-v1
Spt-Mir-383
Tgu-Mir-383-v1
Xtr-Mir-383-v1
|
Node of Origin (locus) |
Tetrapoda
|
Node of Origin (family) |
Tetrapoda
|
Genome context (echTel2) |
JH980293: 52608067-52608128 [+]
UCSC
|
Precursor (pre-Mir +30nt flank) |
ACUUCAGAAUCUCCACGUCACCUGCUCCUCAGAUCAGAAGGUGAUUGUGGCUUUGGGUGGAUAUUAAUCAGCCACAGCACUGCCUGGUCAGAAAGAGCAAGUGUCCUAGCCUUUUGCCUCAG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
ACUUCAGAAUCUCCACGU- C C-| A AA A UUGGGUGG
CAC UGCUC UC GAUCAG GGUG UUGUGGCU \
GUG ACGAG AG CUGGUC UCAC GACACCGA A
GACUCCGUUUUCCGAUCCU A AA^ A CG - CUAAUUAU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Ete-Mir-383-v1_5p |
mirBase accession | None |
Sequence |
0- AGAUCAGAAGGUGAUUGUGGCU -22
Get sequence
|
Star sequence |
Ete-Mir-383-v1_3p* |
mirBase accession | None |
Sequence |
41- CCACAGCACUGCCUGGUCAGA -62
Get sequence
|