Mir-383-v1

MirGeneDB ID

Ocu-Mir-383-v1

Family name

MIR-383 (all species)

Seed

GAUCAGA

Species

Rabbit (Oryctolagus cuniculus)

MiRBase ID

ocu-mir-383

Paralogues

Ocu-Mir-383-v2

Orthologues

Aca-Mir-383-v1 Ami-Mir-383-v1 Bta-Mir-383-v1 Cfa-Mir-383-v1 Cja-Mir-383-v1 Cli-Mir-383-v1 Cpi-Mir-383-v1 Cpo-Mir-383-v1 Dno-Mir-383-v1 Eca-Mir-383-v1 Ete-Mir-383-v1 Gga-Mir-383-v1 Gja-Mir-383-v1 Hsa-Mir-383-v1 Laf-Mir-383-v1 Mdo-Mir-383-v1 Mml-Mir-383-v1 Mmr-Mir-383-v1 Mmu-Mir-383-v1 Mun-Mir-383 Oan-Mir-383-v1 Pab-Mir-383-v1 Pbv-Mir-383-v1 Rno-Mir-383-v1 Sha-Mir-383-v1 Spt-Mir-383 Tgu-Mir-383-v1 Xtr-Mir-383-v1

Node of Origin (locus)

Tetrapoda

Node of Origin (family)

Tetrapoda

Genome context
(oryCun2_add)

chrUn0011: 835693-835754 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-383-v1)

Mir-383-v2 chrUn0011: 835692-835754 [+] UCSC Ensembl
Mir-383-v1 chrUn0011: 835693-835754 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

ACUUCAGACUUCCCACGUCACCUGCUCCUCAGAUCAGAAGGUGAUUGUGGCUUUGGGUGGAUAGCAAUCAGCCACAGCACUGCCUGGUCAGAAAGAGCAAGUGUCCUAGCCUUUUACCUCAU

Get precursor sequence

Structure

        10         20         30        40        50        60 
ACUUCAGACUUCCCACGU-   C     C-| A      AA    A        UUGGGUGG 
                   CAC UGCUC  UC GAUCAG  GGUG UUGUGGCU        \
                   GUG ACGAG  AG CUGGUC  UCAC GACACCGA        A
UACUCCAUUUUCCGAUCCU   A     AA^ A      CG    -        CUAACGAU 
120       110       100        90        80         70