Mir-383-v1

MirGeneDB ID

Rno-Mir-383-v1

Family name

MIR-383 (all species)

Seed

GAUCAGA

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-383

Paralogues

Rno-Mir-383-v2

Orthologues

Aca-Mir-383-v1 Ami-Mir-383-v1 Bta-Mir-383-v1 Cfa-Mir-383-v1 Cja-Mir-383-v1 Cli-Mir-383-v1 Cpi-Mir-383-v1 Cpo-Mir-383-v1 Dno-Mir-383-v1 Eca-Mir-383-v1 Ete-Mir-383-v1 Gga-Mir-383-v1 Gja-Mir-383-v1 Hsa-Mir-383-v1 Laf-Mir-383-v1 Mdo-Mir-383-v1 Mml-Mir-383-v1 Mmr-Mir-383-v1 Mmu-Mir-383-v1 Mun-Mir-383 Oan-Mir-383-v1 Ocu-Mir-383-v1 Pab-Mir-383-v1 Pbv-Mir-383-v1 Sha-Mir-383-v1 Spt-Mir-383 Tgu-Mir-383-v1 Xtr-Mir-383-v1

Node of Origin (locus)

Tetrapoda

Node of Origin (family)

Tetrapoda

Genome context
(rn6)

chr16: 57519680-57519741 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-383-v1)

Mir-383-v2 chr16: 57519679-57519741 [+] UCSC Ensembl
Mir-383-v1 chr16: 57519680-57519741 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCUCCAGAAACUCCACGUCACCUGCUCCUCAGAUCAGAAGGUGACUGUGGCUUUGGGUGGAUAUUAAUCAGCCACAGCACUGCCUGGUCAGAAAGAGCAAGUGUCCUAGCCUUUUACCUCAU

Get precursor sequence

Structure

        10         20         30        40        50        60 
CCUCCAGAAACUCCACGU-   C     C-| A      AA    A        UUGGGUGG 
                   CAC UGCUC  UC GAUCAG  GGUG CUGUGGCU        \
                   GUG ACGAG  AG CUGGUC  UCAC GACACCGA        A
UACUCCAUUUUCCGAUCCU   A     AA^ A      CG    -        CUAAUUAU 
120       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Mature sequence

Rno-Mir-383-v1_5p

mirBase accession

MIMAT0003114

Sequence

0- AGAUCAGAAGGUGACUGUGGCU -22

Get sequence

Proposed targets

microrna.org: MIMAT0003114
TargetScanVert: rno-miR-383-5p
miRDB: MIMAT0003114

Star sequence

Rno-Mir-383-v1_3p*

mirBase accession

MIMAT0017197

Sequence

41- CCACAGCACUGCCUGGUCAGA -62

Get sequence

Proposed targets

TargetScanVert: rno-miR-383-3p
miRDB: MIMAT0017197