MirGeneDB 2.1
MirGeneDB ID

Hme-Mir-9-o2

Family name MIR-9 (all species)
Seed CUUUGGU
Species Longwing butterfly (Heliconius melpomene)
MiRBase ID hme-mir-9b
Paralogues Hme-Mir-9-o1  Hme-Mir-9-o3  Hme-Mir-9-o4 
Orthologues Aca-Mir-9-P2  Ami-Mir-9-P2  Bfl-Mir-9  Bla-Mir-9  Bpl-Mir-9  Bta-Mir-9-P2  Cfa-Mir-9-P2  Cin-Mir-9  Cli-Mir-9-P2  Cmi-Mir-9-P2  Cpi-Mir-9-P2  Cpo-Mir-9-P2  Cte-Mir-9  Dno-Mir-9-P2  Dre-Mir-9-P2a  Dre-Mir-9-P2b  Esc-Mir-9  Ete-Mir-9-P2  Gga-Mir-9-P2  Gja-Mir-9-P2  Gmo-Mir-9-P2b  Hsa-Mir-9-P2  Isc-Mir-9  Lan-Mir-9  Lch-Mir-9-P2  Lgi-Mir-9  Loc-Mir-9-P2  Mal-Mir-9-P2b  Mdo-Mir-9-P2  Mml-Mir-9-P2  Mmu-Mir-9-P2  Mun-Mir-9-P2  Npo-Mir-9  Oan-Mir-9-P2  Obi-Mir-9  Ocu-Mir-9-P2  Ovu-Mir-9  Pbv-Mir-9-P2  Pma-Mir-9-o2  Pmi-Mir-9  Rno-Mir-9-P2  Sha-Mir-9-P2  Spt-Mir-9-P2  Spu-Mir-9  Sto-Mir-9-P2  Tgu-Mir-9-P2  Tni-Mir-9-P2b  Xbo-Mir-9  Xla-Mir-9-P2c  Xla-Mir-9-P2d  Xtr-Mir-9-P2 
Node of Origin (locus) H. melpomene
Node of Origin (family) Bilateria
Genome context
(Hmel_1)		 HE670875: 766577-766635 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UCAGCGACUCGUCUACCGACAGGCUAAUUAUCUUUGGUUUUCUAGCUGUAUGAGUAUUGAGACAUCAUAAAGCUAGGUUACCGGAGUUAAGGGCCGUCUUUGAUCUACAAUGUCAUAAC
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Structure
        10            20        30        40        50         
UCAGCGACUCGUCUACC----|  A    AA   U       UU       G     GUAUU 
                     GAC GGCU  UUA CUUUGGU  UCUAGCU UAUGA     \
                     CUG CCGG  AAU GAGGCCA  GGAUCGA AUACU     G
CAAUACUGUAACAUCUAGUUU^  -    G-   U       UU       A     ACAGA 
       110       100          90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Ad Fe Fe Fe Fe Ma Ma
Mature sequence

Hme-Mir-9-o2_5p
mirBase accessionMIMAT0025002
Sequence 
0- UCUUUGGUUUUCUAGCUGUAUGA -23
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Star sequence

Hme-Mir-9-o2_3p*
mirBase accessionNone
Sequence 
36- AUAAAGCUAGGUUACCGGAGUUA -59
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