MirGeneDB ID | Pab-Mir-143 |
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Family name | MIR-143 (all species) |
Seed | GAGAUGA |
Species | Sumatran orangutan (Pongo abelii) |
MiRBase ID | |
Paralogues | |
Orthologues | Aca-Mir-143 Ami-Mir-143 Bta-Mir-143 Cfa-Mir-143 Cja-Mir-143 Cli-Mir-143 Cmi-Mir-143 Cpi-Mir-143 Cpo-Mir-143 Dno-Mir-143 Dre-Mir-143 Ebu-Mir-143 Eca-Mir-143 Ete-Mir-143 Gga-Mir-143 Gja-Mir-143 Gmo-Mir-143 Hsa-Mir-143 Laf-Mir-143 Lch-Mir-143 Loc-Mir-143 Mal-Mir-143 Mdo-Mir-143 Mml-Mir-143 Mmr-Mir-143 Mmu-Mir-143 Mun-Mir-143 Neu-Mir-143 Oan-Mir-143 Ocu-Mir-143 Pbv-Mir-143 Pma-Mir-143 Rno-Mir-143 Sha-Mir-143 Spt-Mir-143 Sto-Mir-143 Tgu-Mir-143 Xla-Mir-143-P1 Xla-Mir-143-P2 Xtr-Mir-143 |
Node of Origin (locus) | Vertebrata |
Node of Origin (family) | Vertebrata |
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054683.2: 158062414-158062468 [+] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | AGCAGCGCAGCGCCCUGUCUCCCAGCCUGAGGUGCAGUGCUGCAUCUCUGGUCAGUUGGGAGUCUGAGAUGAAGCACUGUAGCUCAGGAAGAGAGAAGUUGUUCUGCAGCCAUCAGet precursor sequence |
Structure | 10 20 30 40 50 AGCAGCGCAGCGCCCUG--| CCAG G G UGGUCAGU UCUC CCUGAG UGCAGUGCU CAUCUC \ AGAG GGACUC AUGUCACGA GUAGAG U ACUACCGACGUCUUGUUGA^ AGAA G A UCUGAGGG 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | Yes |
Motifs | No |
Star sequence | Pab-Mir-143_5p* |
mirBase accession | None |
Sequence |
0- GGUGCAGUGCUGCAUCUCUGG -21
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|
Mature sequence | Pab-Mir-143_3p |
mirBase accession | None |
Sequence |
34- UGAGAUGAAGCACUGUAGCUC -55
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