MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-143

Family name MIR-143 (all species)
Seed GAGAUGA
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-143
Paralogues
Orthologues Aca-Mir-143  Bta-Mir-143  Cfa-Mir-143  Cja-Mir-143  Cli-Mir-143  Cmi-Mir-143  Cpi-Mir-143  Cpo-Mir-143  Dno-Mir-143  Dre-Mir-143  Ebu-Mir-143  Eca-Mir-143  Ete-Mir-143  Gga-Mir-143  Gja-Mir-143  Gmo-Mir-143  Hsa-Mir-143  Laf-Mir-143  Lch-Mir-143  Loc-Mir-143  Mal-Mir-143  Mdo-Mir-143  Mml-Mir-143  Mmr-Mir-143  Mmu-Mir-143  Mun-Mir-143  Neu-Mir-143  Oan-Mir-143  Ocu-Mir-143  Pab-Mir-143  Pbv-Mir-143  Pma-Mir-143  Rno-Mir-143  Sha-Mir-143  Spt-Mir-143  Sto-Mir-143  Tgu-Mir-143  Xla-Mir-143-P1  Xla-Mir-143-P2  Xtr-Mir-143 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017713851.1: 13479126-13479180 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-143)		 Mir-145 NW_017713851.1: 13478308-13478367 [-] UCSC
Mir-143 NW_017713851.1: 13479126-13479180 [-] UCSC
Precursor
(pre-Mir +30nt flank)
GACAGAGCUCUUCAAUGUCUCCCAGCCCAAGGUGCAGUGCUGCAUCUCUGGUCAGUUGUGAGUCUGAGAUGAAGCACUGUAGCUCGGGAAGGGAGGAACUGUGCAGCUGAGAGAC
Get precursor sequence
Structure
        10          20        30        40        50       
GACAGAGCUCUUCAAUG--|     AG   A  G         G      UGGUCAGU 
                   UCUCCC  CCC AG UGCAGUGCU CAUCUC        \
                   GGAGGG  GGG UC AUGUCACGA GUAGAG        U
CAGAGAGUCGACGUGUCAA^     AA   C  G         A      UCUGAGUG 
   110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU Yes
MotifsNo
Tissue expression
-   +
To
Star sequence

Ami-Mir-143_5p*
mirBase accessionMIMAT0038165
Sequence 
0- GGUGCAGUGCUGCAUCUCUGG -21
Get sequence
Mature sequence

Ami-Mir-143_3p
mirBase accessionMIMAT0038166
Sequence 
34- UGAGAUGAAGCACUGUAGCUC -55
Get sequence