Mir-143

MirGeneDB ID

Rno-Mir-143

Family name

MIR-143 (all species)

Seed

GAGAUGA

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-143

Paralogues

Orthologues

Aca-Mir-143 Ami-Mir-143 Bta-Mir-143 Cfa-Mir-143 Cja-Mir-143 Cli-Mir-143 Cmi-Mir-143 Cpi-Mir-143 Cpo-Mir-143 Dno-Mir-143 Dre-Mir-143 Ebu-Mir-143 Eca-Mir-143 Ete-Mir-143 Gga-Mir-143 Gja-Mir-143 Gmo-Mir-143 Hsa-Mir-143 Laf-Mir-143 Lch-Mir-143 Loc-Mir-143 Mal-Mir-143 Mdo-Mir-143 Mml-Mir-143 Mmr-Mir-143 Mmu-Mir-143 Mun-Mir-143 Neu-Mir-143 Oan-Mir-143 Ocu-Mir-143 Pab-Mir-143 Pbv-Mir-143 Pma-Mir-143 Sha-Mir-143 Spt-Mir-143 Sto-Mir-143 Tgu-Mir-143 Xla-Mir-143-P1 Xla-Mir-143-P2 Xtr-Mir-143

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(rn6)

chr18: 56971298-56971352 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-143)

Mir-145 chr18: 56969920-56969979 [-] UCSC Ensembl
Mir-143 chr18: 56971298-56971352 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGAGCGCGGAGCGCCUGUCUCCCAGCCUGAGGUGCAGUGCUGCAUCUCUGGUCAGUUGGGAGUCUGAGAUGAAGCACUGUAGCUCAGGAAGGGAGAAGAUGUUCUGCAGCCGUCG

Get precursor sequence

Structure

        10          20        30        40        50       
UGAGCGCGGAGCGCCUG--|     AG      G         G      UGGUCAGU 
                   UCUCCC  CCUGAG UGCAGUGCU CAUCUC        \
                   AGAGGG  GGACUC AUGUCACGA GUAGAG        U
GCUGCCGACGUCUUGUAGA^     AA      G         A      UCUGAGGG 
   110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Yes

Motifs

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Star sequence

Rno-Mir-143_5p*

mirBase accession

MIMAT0017129

Sequence

0- GGUGCAGUGCUGCAUCUCUGG -21

Get sequence

Proposed targets

TargetScanVert: rno-miR-143-5p
miRDB: MIMAT0017129

Mature sequence

Rno-Mir-143_3p

mirBase accession

MIMAT0000849

Sequence

34- UGAGAUGAAGCACUGUAGCUC -55

Get sequence

Proposed targets

microrna.org: MIMAT0000849
TargetScanVert: rno-miR-143-3p
miRDB: MIMAT0000849