Mir-143-P1

MirGeneDB ID

Xla-Mir-143-P1

Family name

MIR-143 (all species)

Seed

GAGAUGA

Species

African clawed frog (Xenopus laevis)

MiRBase ID

xla-mir-143

Paralogues

Xla-Mir-143-P2

Orthologues

Aca-Mir-143 Ami-Mir-143 Bta-Mir-143 Cfa-Mir-143 Cja-Mir-143 Cli-Mir-143 Cmi-Mir-143 Cpi-Mir-143 Cpo-Mir-143 Dno-Mir-143 Dre-Mir-143 Ebu-Mir-143 Eca-Mir-143 Ete-Mir-143 Gga-Mir-143 Gja-Mir-143 Gmo-Mir-143 Hsa-Mir-143 Laf-Mir-143 Lch-Mir-143 Loc-Mir-143 Mal-Mir-143 Mdo-Mir-143 Mml-Mir-143 Mmr-Mir-143 Mmu-Mir-143 Mun-Mir-143 Neu-Mir-143 Oan-Mir-143 Ocu-Mir-143 Pab-Mir-143 Pbv-Mir-143 Pma-Mir-143 Rno-Mir-143 Sha-Mir-143 Spt-Mir-143 Sto-Mir-143 Tgu-Mir-143 Xtr-Mir-143

Node of Origin (locus)

X. laevis

Node of Origin (family)

Vertebrata

Genome context
(GCF_001663975.1_XLA_v2)

NC_030728.1: 33609524-33609578 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-143-P1)

Mir-145-P1 NC_030728.1: 33608579-33608638 [-] UCSC Ensembl
Mir-143-P1 NC_030728.1: 33609524-33609578 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

ACCAGACGCACCCACUGUCUCCCAGCCCAAGGUGCAGUGCUGCAUCUCUGGUCAAUUGUGAGUCUGAGAUGAAGCACUGUAGCUCGGGAAGGGGGAAACAUGCGGCCACCCAGGA

Get precursor sequence

Structure

        10          20        30        40        50       
ACCAGACGCACCCACUG--|     AG   A  G         G      UGGUCAAU 
                   UCUCCC  CCC AG UGCAGUGCU CAUCUC        \
                   AGGGGG  GGG UC AUGUCACGA GUAGAG        U
AGGACCCACCGGCGUACAA^     AA   C  G         A      UCUGAGUG 
   110       100        90        80        70        60

Deep sequencing

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3' NTU

Yes

Motifs

CNNC at 3p(+17)

Tissue expression

Em

Star sequence

Xla-Mir-143-P1_5p*

mirBase accession

MIMAT0046456

Sequence

0- GGUGCAGUGCUGCAUCUCUGGUC -23

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Mature sequence

Xla-Mir-143-P1_3p

mirBase accession

MIMAT0046457

Sequence

34- UGAGAUGAAGCACUGUAGCUC -55

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