MirGeneDB 3.0
MirGeneDB ID

Bta-Mir-143

Family name MIR-143 (all species)
Seed GAGAUGA
Species Cow (Bos taurus)
MiRBase ID bta-mir-143
Paralogues
Orthologues Aca-Mir-143  Ami-Mir-143  Cfa-Mir-143  Cja-Mir-143  Cli-Mir-143  Cmi-Mir-143  Cpi-Mir-143  Cpo-Mir-143  Dno-Mir-143  Dre-Mir-143  Ebu-Mir-143  Eca-Mir-143  Ete-Mir-143  Gga-Mir-143  Gja-Mir-143  Gmo-Mir-143  Hsa-Mir-143  Laf-Mir-143  Lch-Mir-143  Loc-Mir-143  Mal-Mir-143  Mdo-Mir-143  Mml-Mir-143  Mmr-Mir-143  Mmu-Mir-143  Mun-Mir-143  Neu-Mir-143  Oan-Mir-143  Ocu-Mir-143  Pab-Mir-143  Pbv-Mir-143  Pma-Mir-143  Rno-Mir-143  Sha-Mir-143  Spt-Mir-143  Sto-Mir-143  Tgu-Mir-143  Xla-Mir-143-P1  Xla-Mir-143-P2  Xtr-Mir-143 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)		 NC_037334.1: 60812142-60812196 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-143)		 Mir-143 NC_037334.1: 60812142-60812196 [+] UCSC Ensembl
Mir-145 NC_037334.1: 60813565-60813624 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGUGGUAUGGCGUCCUGUCUCCCAGCCUGAGGUGCAGUGCUGCAUCUCUGGUCAGUUGGGAGUCUGAGAUGAAGCACUGUAGCUCGGGAAGGGAGAAGUUGUUCUGCAGCCGUCG
Get precursor sequence
Structure
        10          20        30        40        50       
AGUGGUAUGGCGUCCUG--|     AG      G         G      UGGUCAGU 
                   UCUCCC  CCUGAG UGCAGUGCU CAUCUC        \
                   AGAGGG  GGGCUC AUGUCACGA GUAGAG        U
GCUGCCGACGUCUUGUUGA^     AA      G         A      UCUGAGGG 
   110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU Yes
MotifsNo
Tissue expression
-   +
Ad Bo Br Ce Co Co De Fe He Hy Ir Ki La Lo Mi No Op Or Pe Re Su Te
Star sequence

Bta-Mir-143_5p*
mirBase accessionNone
Sequence 
0- GGUGCAGUGCUGCAUCUCUGG -21
Get sequence
Mature sequence

Bta-Mir-143_3p
mirBase accessionMIMAT0009233
Sequence 
34- UGAGAUGAAGCACUGUAGCUC -55
Get sequence
Proposed targets TargetScanVert: bta-miR-143